Locus 394

Sequence ID 2R_DroMel_CAF1
Location 2,372,257 – 2,372,363
Length 106
Max. P 0.661469
window775

overview

Window 5

Location 2,372,257 – 2,372,363
Length 106
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.29
Mean single sequence MFE -32.72
Consensus MFE -23.40
Energy contribution -23.48
Covariance contribution 0.08
Combinations/Pair 1.16
Mean z-score -1.86
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.661469
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2372257 106 - 20766785
GCUCUACGAUUGUCGAAACCGAUGGAAGGCAUUUGUUAAUUAAAAGCAAGCAGCAAAUGUG--------------CCAGGAGCAGAAGGACGUGGGAACACGUGCUAAAUAAAUACUCCU
(((((....(..(((....)))..)..((((((((((..((......))..)))))..)))--------------)).)))))...((.(((((....))))).)).............. ( -30.90)
>DroSec_CAF1 21605 112 - 1
GCUCUGCGAUUGUCGAAACCGAUGGUAGGCAUUUGUUAAUUAAAAGCAAGCAGCGAAUGUGCC-------GAGUGCCAGGAGCAGCA-GACGUGGGAACACGUGCUAAAUAAAUACUCGU
(((((...((..(((....)))..)).((((((((...(((....((.....)).)))....)-------))))))).)))))(((.-.(((((....)))))))).............. ( -35.30)
>DroSim_CAF1 21788 113 - 1
GCUCUACGAUUGUCGAAACCGAUGGUAGGCAUUUGUUAAUUAAAAGCAAGCAGCGAAUGUGCC-------GAGUGCCAGGAGCAGCAGGACGUGGGAACACGUGCUAAAUAAAUACUCGU
(((((...((..(((....)))..)).((((((((...(((....((.....)).)))....)-------))))))).)))))...((.(((((....))))).)).............. ( -36.20)
>DroEre_CAF1 21213 112 - 1
GCUCAACGAUUGUCAAAAGCGAUGGAAGGCAUUUGUUAAUUAAAAGCAAGCAGCAAAUGUGCC-------GAGUGCCAGGGGCAAAACGACGUGGGAACACGUGCUAAAUAAAUACUCC-
((((..(.(((((.....))))).)..((((((((..........(....).(((....))))-------)))))))..))))......(((((....)))))................- ( -28.70)
>DroYak_CAF1 20965 119 - 1
GCUCAGCAACUGUCAAAACCGAUGGAAGGCAUUUGUUAAUUAAAAGCAUGCAGCAGAUGGGCCGGGAGCAGAGUGCCAGGAGCAAGAGGACGUGGGAACACGUGCUAAAUAAAUACUCC-
((((.....(((((......)))))..(((((((...........((.....))......((.....)).)))))))..))))...((.(((((....))))).)).............- ( -32.50)
>consensus
GCUCUACGAUUGUCGAAACCGAUGGAAGGCAUUUGUUAAUUAAAAGCAAGCAGCAAAUGUGCC_______GAGUGCCAGGAGCAGAAGGACGUGGGAACACGUGCUAAAUAAAUACUCCU
((((.....(..((......))..)...(((((((((..((......))..)))))))))...................))))...((.(((((....))))).)).............. (-23.40 = -23.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:27 2006