Locus 3937

Sequence ID 2R_DroMel_CAF1
Location 12,994,112 – 12,994,207
Length 95
Max. P 0.774871
window6356

overview

Window 6

Location 12,994,112 – 12,994,207
Length 95
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 85.57
Mean single sequence MFE -27.90
Consensus MFE -21.40
Energy contribution -21.52
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -1.83
Structure conservation index 0.77
SVM decision value 0.54
SVM RNA-class probability 0.774871
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12994112 95 - 20766785
CGCGG-----UCCACUUCACUCGGUCAACUGGUUUUCGAUUGAACUCGGAAACGAGCUCGAACUUCAGCUUGCUCAUGGCAUUGGCCUAAAAGCUAACUC
.((((-----......))....((((((((((..(((((.....((((....)))).)))))..))))..(((.....))))))))).....))...... ( -26.20)
>DroSec_CAF1 9503 95 - 1
CGCGG-----UCCACUUCACUCGGCCAACUCGUUUUCGAUUGAACUCGGAAACGAGCUCGAACUUCAGCUUGCUCAUGGCAUUGGCCUAAAAGCUAACUC
.((((-----......))....(((((((((((((((((......)))))))))))...........(((.......))).)))))).....))...... ( -28.20)
>DroSim_CAF1 8601 95 - 1
CGCGG-----UCCACUUCACUCGGCCAACUGGUUUUCGAUUGAACUCGGAAACGAGCUCGAACUUCAGCUUGCUCAUGGCAUUGGCCUAAAAGCUAACUC
.((((-----......))....((((((((((..(((((.....((((....)))).)))))..))))..(((.....))))))))).....))...... ( -28.90)
>DroEre_CAF1 8613 88 - 1
------------CACUUCACUGGGCCAACUGGUUUUGAAUUGAACUCGGAAACGAGCUCCAAUGUCAGCCAGCUUAUGGCGUUGGCCGAAAAGCUAACUC
------------..........(((((((......(((((((..((((....))))...)))).)))((((.....)))))))))))............. ( -30.60)
>DroYak_CAF1 8720 100 - 1
CGCGACUUUAGCCACUUCAUUUGGCUAACUCGUUUUCAAUUGAAGUCGGAAACGCGCUCGAACUUCGGCUUGCUCAUGGCAUUGGCCCAAAAGCUAACUU
.((((..(((((((.......))))))).))))........((((((((........))).)))))(((((......(((....)))...)))))..... ( -25.60)
>consensus
CGCGG_____UCCACUUCACUCGGCCAACUGGUUUUCGAUUGAACUCGGAAACGAGCUCGAACUUCAGCUUGCUCAUGGCAUUGGCCUAAAAGCUAACUC
......................((((((...........((((.((((....)))).))))......(((.......))).))))))............. (-21.40 = -21.52 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:45 2006