Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,989,079 – 12,989,189 |
Length | 110 |
Max. P | 0.990939 |
Location | 12,989,079 – 12,989,189 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -23.04 |
Consensus MFE | -20.28 |
Energy contribution | -20.92 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.77 |
Structure conservation index | 0.88 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12989079 110 + 20766785 UGACGCUGGAUAAAGCAAAGUAAUUAACCCAAAAUUUCGUUUCCUCAAUUGUUCAAAAAUGAGUCGUCUGCUUUGUCCAGUUGUCUCCAUUAAUUAUACACUGAACUA-AC .((((((((((((((((((....))..................((((.((......)).)))).....)))))))))))).)))).......................-.. ( -24.50) >DroSec_CAF1 3623 110 + 1 UGACGCUGGAUAAAGCAAAGUAGUUUACCCAACUUUUCGUUUCCACAAUUGUUCAACAAUGAGUCGUCUGCUUUGUCCAGUUGUCUCCAUUAAUUAUACACUGAACUA-AC .((((((((((((((((((((.(......).))))).((.(((....((((.....))))))).))...))))))))))).)))).......................-.. ( -24.40) >DroSim_CAF1 3551 111 + 1 UGACGCUGGACGAAGCAAAGUAGUUUACCCAACUUUUCGUUUCCACAAUUGUUCAACAAUGAGUCGUCUGCUUUGUCCAGUUGUCUCCAUUAAUUAUACACUGAACUAAAC .((((((((((((((((((((.(......).))))).((.(((....((((.....))))))).))...))))))))))).)))).......................... ( -26.00) >DroEre_CAF1 3645 110 + 1 UGACACCGGACAAAGCAAAGUAGUUUACCUAACUUUUCGUUUCCACAAUUGUUCAACAAUGAGUCGUCUGCCUUGUCCAGAUGUCUCCAUUAAUUAUGCACUGAACUA-AC .......(((....(.(((((((.....)).))))).)...)))......(((((.....(((.((((((.......)))))).)))(((.....)))...)))))..-.. ( -19.30) >DroYak_CAF1 3624 110 + 1 UGACGACGGACAAAGCAAAGUAGUUUACCUAACUUUUCGUUUCCACAAUUGUUCAACAAUGAGUCGUCUGCUUUGUCCAGAUGUCCACAUUAAUUAUACACUGAACUA-AU .((((.(((((((((((....((((.....))))...((.(((....((((.....))))))).))..)))))))))).).)))).......................-.. ( -21.00) >consensus UGACGCUGGACAAAGCAAAGUAGUUUACCCAACUUUUCGUUUCCACAAUUGUUCAACAAUGAGUCGUCUGCUUUGUCCAGUUGUCUCCAUUAAUUAUACACUGAACUA_AC .((((((((((((((((..(.((((.....))))...)............(((((....)))).)...)))))))))))).)))).......................... (-20.28 = -20.92 + 0.64)
Location | 12,989,079 – 12,989,189 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -29.36 |
Consensus MFE | -24.92 |
Energy contribution | -26.52 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.07 |
Mean z-score | -2.12 |
Structure conservation index | 0.85 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12989079 110 - 20766785 GU-UAGUUCAGUGUAUAAUUAAUGGAGACAACUGGACAAAGCAGACGACUCAUUUUUGAACAAUUGAGGAAACGAAAUUUUGGGUUAAUUACUUUGCUUUAUCCAGCGUCA ((-(((((........)))))))...(((..(((((.((((((((.((((((.........((((..(....)..)))).))))))......)))))))).))))).))). ( -24.40) >DroSec_CAF1 3623 110 - 1 GU-UAGUUCAGUGUAUAAUUAAUGGAGACAACUGGACAAAGCAGACGACUCAUUGUUGAACAAUUGUGGAAACGAAAAGUUGGGUAAACUACUUUGCUUUAUCCAGCGUCA ((-(((((........)))))))...(((..(((((.((((((((((((.....))))..(((((.((....))...)))))..........)))))))).))))).))). ( -29.30) >DroSim_CAF1 3551 111 - 1 GUUUAGUUCAGUGUAUAAUUAAUGGAGACAACUGGACAAAGCAGACGACUCAUUGUUGAACAAUUGUGGAAACGAAAAGUUGGGUAAACUACUUUGCUUCGUCCAGCGUCA ......((((.((......)).))))(((..((((((.(((((((((((.....))))..(((((.((....))...)))))..........))))))).)))))).))). ( -30.50) >DroEre_CAF1 3645 110 - 1 GU-UAGUUCAGUGCAUAAUUAAUGGAGACAUCUGGACAAGGCAGACGACUCAUUGUUGAACAAUUGUGGAAACGAAAAGUUAGGUAAACUACUUUGCUUUGUCCGGUGUCA ((-(((((........)))))))...((((.((((((((((((((((((.....)))).....((((....))))..((((.....))))..)))))))))))))))))). ( -34.00) >DroYak_CAF1 3624 110 - 1 AU-UAGUUCAGUGUAUAAUUAAUGUGGACAUCUGGACAAAGCAGACGACUCAUUGUUGAACAAUUGUGGAAACGAAAAGUUAGGUAAACUACUUUGCUUUGUCCGUCGUCA ..-..(((((((((...((....))..))).))))))......(((((((((....)))........(((.....(((((.(((((...))))).))))).))))))))). ( -28.60) >consensus GU_UAGUUCAGUGUAUAAUUAAUGGAGACAACUGGACAAAGCAGACGACUCAUUGUUGAACAAUUGUGGAAACGAAAAGUUGGGUAAACUACUUUGCUUUGUCCAGCGUCA ..........................(((..((((((((((((((((((.....))))..(((((.((....))...)))))..........)))))))))))))).))). (-24.92 = -26.52 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:44 2006