Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,974,827 – 12,974,917 |
Length | 90 |
Max. P | 0.589445 |
Location | 12,974,827 – 12,974,917 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 93.01 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -18.36 |
Energy contribution | -19.24 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.10 |
Mean z-score | -1.18 |
Structure conservation index | 0.89 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12974827 90 - 20766785 UAU----GUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCAGGCUUUGAUCGUUUGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU ...----(((((.......(((((((.....)))))))..(((((((((.......))))))..)))....))))).................. ( -22.80) >DroSec_CAF1 16507 90 - 1 UAU----GUGGAUAAGACUUUCUACGAUUUGCGUACAACAGCUGCUGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU (((----(..(((.((.....))...)))..))))...(((((((((((...........)).))))...................)))))... ( -16.50) >DroSim_CAF1 18315 90 - 1 UAU----GUGGAUAAGACUUUCUACGAUUUGCGUACAACAGCUGCAGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU ...----(((((.((..((....((((((.((.(.((.....)).).))...))))))......))..)).))))).................. ( -15.60) >DroEre_CAF1 15492 90 - 1 UAU----GUGGAAACGACUUUCUACGAUUUGCGUAGAACAGCUGCGAUCUUUGAUCGUUCGCACAGCGUUUUCCACUCAUUUUCCAAGCUGAUU ...----(((((((((.(((((((((.....)))))))..((.((((((...))))))..))..)))).))))))).................. ( -25.90) >DroYak_CAF1 22854 94 - 1 CAUCAUUAUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCGGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU .((((.(.((((.......(((((((.....)))))))..(((((((((.......))))))..)))...............)))).).)))). ( -22.70) >consensus UAU____GUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCAGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU .......(((((.......(((((((.....)))))))..(((((((((.......))))))..)))....))))).................. (-18.36 = -19.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006