Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,954,245 – 12,954,335 |
Length | 90 |
Max. P | 0.684797 |
Location | 12,954,245 – 12,954,335 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 66.79 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -13.81 |
Energy contribution | -16.93 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.20 |
Mean z-score | -2.35 |
Structure conservation index | 0.42 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12954245 90 - 20766785 GGGAAGAUGCAUCUCCGCAUACCCGCAUCUGUAGCAG-UGCGAGCAGCUGCGUUUCCAACAUUUAUC-GGGGAUGCAGCAGCAGCUUUUCGG (..(((((((......))))...((((.(((...)))-)))).((.(((((((..((..........-))..))))))).))..)))..).. ( -33.80) >DroYak_CAF1 6119 89 - 1 GGGAAG-UGCAUCUCCGCAUCCCCGCAGCUGUAGUAA-UGCGAGCAGCUGCGCUUCCAGCUCUUAUC-GGGGAUGCAGCAGCAGCUUUCCGG ((((((-(((..((..((((((((((((((((.(...-..)..))))))))((.....)).......-))))))))))..))).)))))).. ( -43.50) >DroAna_CAF1 5835 71 - 1 GGGAUGAUGCA-------GUAACCGUA---GUAACAGACGGAAGCUGCUGG-----AAUCACUUAUCCGGAGAUGCAGUAGC------CCGG (((....((((-------....((((.---.......))))...((.((((-----(........))))))).))))....)------)).. ( -21.50) >consensus GGGAAGAUGCAUCUCCGCAUACCCGCA_CUGUAGCAG_UGCGAGCAGCUGCG_UUCCAACACUUAUC_GGGGAUGCAGCAGCAGCUUUCCGG ((((((.(((.....((((.....((.......))...))))....((((((.((((...........)))).)))))).))).)))))).. (-13.81 = -16.93 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:37 2006