Locus 393

Sequence ID 2R_DroMel_CAF1
Location 2,370,991 – 2,371,104
Length 113
Max. P 0.884450
window774

overview

Window 4

Location 2,370,991 – 2,371,104
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.26
Mean single sequence MFE -38.44
Consensus MFE -33.80
Energy contribution -34.20
Covariance contribution 0.40
Combinations/Pair 1.11
Mean z-score -1.46
Structure conservation index 0.88
SVM decision value 0.93
SVM RNA-class probability 0.884450
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2370991 113 + 20766785
GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU
.(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10)
>DroSec_CAF1 20389 113 + 1
GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU
.(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10)
>DroSim_CAF1 20570 113 + 1
GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU
.(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10)
>DroEre_CAF1 19731 119 + 1
GGAUGUUCCAGGAUGGGC-GCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUUGGCAGUUGGCAGUUGUCUCCUCUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU
.(((.((((((((.(((.-((((...........))))..(((.(((((((...((.(....).)).))))))).)))..))).))))).))).)))....((((((.....)))))).. ( -39.20)
>DroYak_CAF1 19843 113 + 1
GGAUGUUGCAGGAUGAGAUCCGUUUUCAUUAUCCGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCCGUCCUGCGAGAGUUUCUGGCCCGACACUUUUGGGCAU
...(.((((((((((((((.((..(.....)..))(((......((((((....))))))..-------.)))...)))))..))))))))).).......((((((.....)))))).. ( -35.70)
>consensus
GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU_______GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU
.(((.(((((((((((((.((((...........))))......((((((....)))))).........(((....))))))))))))).))).)))....((((((.....)))))).. (-33.80 = -34.20 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:26 2006