Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,370,991 – 2,371,104 |
Length | 113 |
Max. P | 0.884450 |
Location | 2,370,991 – 2,371,104 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -38.44 |
Consensus MFE | -33.80 |
Energy contribution | -34.20 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.46 |
Structure conservation index | 0.88 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884450 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2370991 113 + 20766785 GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU .(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10) >DroSec_CAF1 20389 113 + 1 GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU .(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10) >DroSim_CAF1 20570 113 + 1 GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU .(((.(((((((((((((.((((...........))))......((((((....))))))..-------(((....))))))))))))).))).)))....((((((.....)))))).. ( -39.10) >DroEre_CAF1 19731 119 + 1 GGAUGUUCCAGGAUGGGC-GCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUUGGCAGUUGGCAGUUGUCUCCUCUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU .(((.((((((((.(((.-((((...........))))..(((.(((((((...((.(....).)).))))))).)))..))).))))).))).)))....((((((.....)))))).. ( -39.20) >DroYak_CAF1 19843 113 + 1 GGAUGUUGCAGGAUGAGAUCCGUUUUCAUUAUCCGUGCAAAUAUUUGCCAAAAAUGGCAGUU-------GGCAGUUGUCUCCCGUCCUGCGAGAGUUUCUGGCCCGACACUUUUGGGCAU ...(.((((((((((((((.((..(.....)..))(((......((((((....))))))..-------.)))...)))))..))))))))).).......((((((.....)))))).. ( -35.70) >consensus GGAUGUUCCAGGAUGGGGCGCACUUUCAUUAUCUGUGCAAAUAUUUGCCAAAAAUGGCAGUU_______GGCAGUUGUCUCCUGUCCUGCGAGAGUUGCUGGCCCGACACUUUUGGGCAU .(((.(((((((((((((.((((...........))))......((((((....)))))).........(((....))))))))))))).))).)))....((((((.....)))))).. (-33.80 = -34.20 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:26 2006