Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,953,460 – 12,953,563 |
Length | 103 |
Max. P | 0.630981 |
Location | 12,953,460 – 12,953,563 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 85.40 |
Mean single sequence MFE | -21.60 |
Consensus MFE | -14.32 |
Energy contribution | -16.07 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.12 |
Mean z-score | -1.75 |
Structure conservation index | 0.66 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.630981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12953460 103 - 20766785 UA--AUAUUUUCGGAUGUAAUAGAACUUCAUAUCGUUU-CUGCUAGCCCAUGCUGGCAUUGCCAAACUGAAUCGAUUAUUCAGAUGACCUUCUUUUCGCAUCACAG ..--.........(((((((.((((..((((...((..-.(((((((....)))))))..))....((((((.....))))))))))..)))).)).))))).... ( -25.70) >DroSec_CAF1 5253 104 - 1 UA--AUAUUUUCGGUUGUAAUAGAACUUCAUCUCGUUUGCUGCUAGCCCAUGCUGGCAUUGCCAAACUAAAUCGAUUAUUCAGAUGACCUUCUUUUCGCAUCACAG ..--........(((.((((.((((..((((((.(((((((((((((....)))))))..).)))))......((....))))))))..)))).)).))))).... ( -24.00) >DroEre_CAF1 5480 106 - 1 UAUAUGAUGUCAUAUAGACAUAGAAUUCCAUUUCAUUUUCUGCUAGCCCAUGCUGGCAUUGCCGAACUGAAUCGAUUAUUCCGAUGACCUUCUUUUCACAUCACAG ....((((((.....(((..........((.(((......(((((((....))))))).....))).)).((((.......)))).....)))....))))))... ( -19.30) >DroYak_CAF1 5313 104 - 1 UA--UUAUAUUGCGAUGUCAUAGAACUUUAUUUCCUUUUCUGCUAGCCCAUGUUGGCAUUGCCAAACUGAAUCGAUUAUUCCGAUGACCUUCUUUUUACAUCACAG ..--......((.(((((...((((...............(((((((....)))))))............((((.......))))....))))....))))).)). ( -17.40) >consensus UA__AUAUUUUCGGAUGUAAUAGAACUUCAUUUCGUUUUCUGCUAGCCCAUGCUGGCAUUGCCAAACUGAAUCGAUUAUUCAGAUGACCUUCUUUUCACAUCACAG .............(((((...((((..((((.........(((((((....)))))))........((((((.....))))))))))..))))....))))).... (-14.32 = -16.07 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:36 2006