Locus 3926

Sequence ID 2R_DroMel_CAF1
Location 12,950,127 – 12,950,222
Length 95
Max. P 0.856032
window6341

overview

Window 1

Location 12,950,127 – 12,950,222
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 68.91
Mean single sequence MFE -24.90
Consensus MFE -12.86
Energy contribution -13.42
Covariance contribution 0.56
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.52
SVM decision value 0.81
SVM RNA-class probability 0.856032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12950127 95 + 20766785
AACUGGUUUU-CAUGCAUUCGCAAUGUGUGUAUACA---UAUACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGACGCUACCAGGGUAGGA
..(((((...-...((....(.(((((.((((((..---.....)))))).))))).)....((((((((....))))))))..)).)))))....... ( -26.60)
>DroPse_CAF1 1709 82 + 1
AACUGGUUUC-UGAGC--UGAUCUUGUGUGGCUGU------UGUUCU--------UUGGAUCUUGAGUUCCAUUGAACUUAGGGCCUGCAACGAACACA
.((.((((..-.....--.))))..))(((..(((------(((...--------..((.((((((((((....)))))))))))).))))))..))). ( -24.00)
>DroSec_CAF1 1869 95 + 1
AACUGGUUUU-CAUGCAUUCGCGAUGUGUGUAUACA---CAUACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGACGCUCCCAGGGUAGGA
.....((((.-..(((....))).((((((....))---))))......))))..(((((.(((((((((....))))))((......)).)))))))) ( -25.10)
>DroEre_CAF1 1847 98 + 1
AACUGGUUUU-CAUGCAUUCUCAAUGUGUGUAUACAACGUAUACUAUGUAAACAUUCCUAACCCGAGUUCAAUGGAACUUGGACGCUCCCAGGGUAGGA
.....((((.-(((((((.......))))((((((...)))))).))).))))..(((((.(((((((((....))))))((......)).)))))))) ( -25.90)
>DroYak_CAF1 1820 99 + 1
AACUGGUUUUCCAUGCAUUUUCAAUGUGUGUAUACGUAGUAUACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGACGCUCCCAGGGUAGGA
...(((....))).........(((((.((((((.(((...))))))))).)))))((((.(((((((((....))))))((......)).))))))). ( -26.30)
>DroPer_CAF1 1740 82 + 1
AACUGGUUUC-UGAGC--UGAUCUUGUGUGGCUGU------UGUUCU--------UUGGAUCUUGAGUUCCAUUGAACUUAGGGCCUGCAACGAAUACA
.((.((((..-.....--.))))..))(((..(((------(((...--------..((.((((((((((....)))))))))))).))))))..))). ( -21.50)
>consensus
AACUGGUUUU_CAUGCAUUCACAAUGUGUGUAUACA___UAUACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGACGCUCCCAGGGUAGGA
..((((.....(((((((.....)))))))................................((((((((....))))))))......))))....... (-12.86 = -13.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006