Locus 3925

Sequence ID 2R_DroMel_CAF1
Location 12,938,740 – 12,938,849
Length 109
Max. P 0.716061
window6340

overview

Window 0

Location 12,938,740 – 12,938,849
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.99
Mean single sequence MFE -31.18
Consensus MFE -21.01
Energy contribution -21.15
Covariance contribution 0.14
Combinations/Pair 1.16
Mean z-score -1.23
Structure conservation index 0.67
SVM decision value 0.39
SVM RNA-class probability 0.716061
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12938740 109 + 20766785
ACGCGCAAAUAACCGCACGAUCUACACGGCCGGACGACCGCCGUGGUACAAUUGUGCUGGGCAACAGGUGGAGCCCUUCGUCAUAGGUAAACA--CAU------C-ACUCCC--AAAAAA
...........((((((((((...((((((.((....)))))))).....))))))).((((..(....)..)))).........))).....--...------.-......--...... ( -31.90)
>DroPse_CAF1 225 108 + 1
ACGGGCCAACAAUCGUACCAUCUAUACAGCCGGUCGUCCGCCAUGGUACAACUGUGCCGGUCAGCAGGUGGAGCCCUUUGUCAUAGGUACGCU--UCA------C-AAUCCC--CCACC-
..(((........((((((...(((((((..(((..((((((.((((((....))))))(....).)))))))))..)))).)))))))))..--...------.-...)))--.....- ( -32.43)
>DroEre_CAF1 216 111 + 1
ACGUGCAAAUAAUCGCACGAUCUACACGGCCGGACGUCCGCCGUGGUAUAAUUGUGCUGGGCAACAGGUGGAGCCCUUCGUCAUAGGUAUACAUAUAU------C-ACUCCC--CAAAAA
.(((((........))))).....((((((.((....))))))))(((((.((((((.((((..(....)..))))...).))))).)))))......------.-......--...... ( -36.30)
>DroMoj_CAF1 153 115 + 1
ACGGUCCAAUAAUCGCACUAUCUAUACGGCCGGACGUCCGCCAUGGUACAAUUGUGCCGGCCAACAGGUCGAACCCUUUGUCAUAGGUGCGUA--AAUCAUAAUCAAU-A--CCUAUAAA
..(((........(((((...((((((((((((....)).....(((((....)))))))))...(((......)))..)).)))))))))..--.......)))...-.--........ ( -28.53)
>DroAna_CAF1 201 104 + 1
UCGAGCCAAUAAUCGCACCAUCUAUACGGCCGGACGUCCUCCAUGGUAUAACUGUGCAGGGCAACAGGUGGAACCUUUCGUCAUAGGUUAGUA--CAU------C------U--CAAAUA
..(((............((((((....(......)(((((.(((((.....))))).)))))...))))))(((((........)))))....--...------)------)--)..... ( -25.50)
>DroPer_CAF1 225 108 + 1
ACGGGCCAACAAUCGUACCAUCUAUACAGCCGGUCGUCCGCCAUGGUACAACUGUGCCGGUCAGCAGGUGGAGCCCUUUGUCAUAGGUACGCU--UCA------C-AAUCCC--CCACC-
..(((........((((((...(((((((..(((..((((((.((((((....))))))(....).)))))))))..)))).)))))))))..--...------.-...)))--.....- ( -32.43)
>consensus
ACGGGCCAAUAAUCGCACCAUCUAUACGGCCGGACGUCCGCCAUGGUACAACUGUGCCGGGCAACAGGUGGAGCCCUUCGUCAUAGGUACGCA__UAU______C_AAUCCC__CAAAAA
...................((((((((((..((...((((((.((((((....))))))(....).)))))).))..)))).))))))................................ (-21.01 = -21.15 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:30 2006