| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,923,135 – 12,923,255 |
| Length | 120 |
| Max. P | 0.520723 |
| Location | 12,923,135 – 12,923,255 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.84 |
| Mean single sequence MFE | -29.45 |
| Consensus MFE | -24.04 |
| Energy contribution | -23.98 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.82 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12923135 120 - 20766785 AGCUACUCCCAUUGAGAUCUGGCGGAAACCGGCGUAAACGGUUUCCGCAUCAGUUUUAAGCCAAAUGUGUUAGUACUUUUAUCAUCGUGUUAGACCCUACGAUUUCUAUUUAAAUUAUAA ...((((..((((((((.(((((((((((((.......))))))))))..))))))))........)))..))))........((((((........))))))................. ( -28.30) >DroSec_CAF1 46460 120 - 1 AGCUACUCCCAUUGAGAUCUGGCGGAAGCCGGCGAAAACGGUUUCCGCAUCAGUUUUAAGCCAAAUGUGUUAGUACUUUUAUCUUUGUGUUAGACCCUACGAUUUCUAUUUAAAUUAUAA .............((((((..((((((((((.......))))))))))...((..((.(((((((.(((..(....)..))).)))).))).))..))..)))))).............. ( -28.90) >DroSim_CAF1 34674 117 - 1 ---UACUCCCAUUGAGAUCUGGCGGAAGCCGGCGAAAACGGUUUCCGCAUCAGUUUUAAGCCAAAUGUGUUAGUACUUUUAUCUUCGUGUUAGACCCUAUGAUUUCUAUUUAAAUUAUAA ---..((..(((.(((((...((((((((((.......))))))))))...(((.((((..(....)..)))).)))...))))).)))..))....((((((((......)))))))). ( -29.70) >DroYak_CAF1 48991 117 - 1 ---UACUCCCAUUGAGAUCUGGCGGAAGGCCGCGAAAGCGGUUUCCGCAUCAGUUUUAAGCCAAAUGUGUUAGUACUUUUAUCAUCGUGUUAGACCCUACGAUUUCUAUUUAAAUUAUAA ---((((..((((((((.((((((((((.((((....)))))))))))..))))))))........)))..))))........((((((........))))))................. ( -30.90) >consensus ___UACUCCCAUUGAGAUCUGGCGGAAGCCGGCGAAAACGGUUUCCGCAUCAGUUUUAAGCCAAAUGUGUUAGUACUUUUAUCAUCGUGUUAGACCCUACGAUUUCUAUUUAAAUUAUAA ...((((..((((((((.(((((((((((((.......))))))))))..))))))))........)))..)))).........(((((........))))).................. (-24.04 = -23.98 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:29 2006