Locus 3920

Sequence ID 2R_DroMel_CAF1
Location 12,917,931 – 12,918,033
Length 102
Max. P 0.953892
window6331

overview

Window 1

Location 12,917,931 – 12,918,033
Length 102
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 80.92
Mean single sequence MFE -30.16
Consensus MFE -17.79
Energy contribution -17.59
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -2.53
Structure conservation index 0.59
SVM decision value 1.44
SVM RNA-class probability 0.953892
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12917931 102 + 20766785
GGCUGUGUGUGUGUGU--------UCGUGUGGGUGGUUGGGUUGGUUUGCGAUAAGCGCGGAGUGCUAAAUCAUUUUUGACCCAUGAGCACAUGCAUGUGGAAUUUCUAU
..(..(((((((((((--------(((((.((((((((.(((...((((((.....))))))..))).))))))......))))))))))))))))))..)......... ( -37.80)
>DroSec_CAF1 41283 98 + 1
----GUGUAUGUGUGU--------UUGUGUGGGUGGGUGGGUUGGUUUGCGAUAAGCGGGUAGUACUAAAUCAUUUUUGACCCAUGAGCACAUGCAUGUGGAAUUUCUAU
----((((((((((..--------...((((((((((((..(((((((((.....)))).....)))))..)))))...))))))).))))))))))((((.....)))) ( -30.20)
>DroSim_CAF1 29463 98 + 1
----GUGUAUGUGUGU--------UUGUGUGGGUGGGCAGGUUGGUUUGCGAUAAGCGGGUAGUACUAAAUCAUUUUUGACCCAUGAGCACAUGCAUGUGGAAUUUCUAU
----((((((((((..--------...(((((((.((.((((.(((((((.....))((......))))))))))))).))))))).))))))))))((((.....)))) ( -27.70)
>DroEre_CAF1 44028 82 + 1
----GUGUGUGUGU------------------GUGGGUGG------GUGCGAUAAGCGGGGAGUACUAAAUCAUUUUUGACCCAUGAACACAUGCAUGUGGAAUUUGUAU
----(..(((((((------------------((..((((------((((.....))((......))............))))))..)))))))))..)........... ( -25.10)
>DroYak_CAF1 43673 100 + 1
----GUGUGUGUGUAAUACACACUGUGUAUGGGUGGGUGG------UUGCGAUAAGCGGGGCGUACUAAAUCAUUUUUGACCCAUGAGCACAUGCAUGUGGAAUUUCCAG
----((((((((((.((((((...))))))((((((((((------((((.....))((......)).))))))))...))))....)))))))))).(((.....))). ( -30.00)
>consensus
____GUGUGUGUGUGU________UUGUGUGGGUGGGUGGGUUGGUUUGCGAUAAGCGGGGAGUACUAAAUCAUUUUUGACCCAUGAGCACAUGCAUGUGGAAUUUCUAU
....((((((((((..................(((((..........(((.....)))............(((....))))))))..))))))))))............. (-17.79 = -17.59 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:21 2006