Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,912,212 – 12,912,304 |
Length | 92 |
Max. P | 0.544313 |
Location | 12,912,212 – 12,912,304 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 88.29 |
Mean single sequence MFE | -29.96 |
Consensus MFE | -23.75 |
Energy contribution | -24.50 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.14 |
Mean z-score | -2.11 |
Structure conservation index | 0.79 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12912212 92 + 20766785 UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG ................((((((((((..................))))))(((((((((((((.....))))))..)--)))))).)))).--... ( -33.77) >DroSec_CAF1 35568 92 + 1 UAUGUGCCUUAUUAAAGGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG ..(((..(((....)))(((((((((..................))))))(((((((((((((.....))))))..)--)))))).))).)--)). ( -33.87) >DroSim_CAF1 23469 92 + 1 UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG ................((((((((((..................))))))(((((((((((((.....))))))..)--)))))).)))).--... ( -33.77) >DroEre_CAF1 38440 92 + 1 UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCAGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCUGA--CAG ..(((...............((((((..................))))))(((((((((((((.....))))))..)--)))))).....)--)). ( -32.07) >DroYak_CAF1 37871 94 + 1 UAUGUGCCUUAUUAAAUGGAUGGGGCAAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGACUUUGGCUUCGAGUCUCUGGGAUCUCUGA--CUG .................(((((((((..................))))))(((((((..((((((.......))))))))))))).)))..--... ( -25.37) >DroAna_CAF1 35975 81 + 1 UAUAUGCUUUAUUA-AUGGAUGGGGCAUACUAACGAAAACGAAAGCCCCACUCCCAGUCGGAG------------UC--UGGGAUCUCUCACACAA ..(((((((((((.-...)))))))))))...........((...(((.(((((.....))))------------).--.)))...))........ ( -20.90) >consensus UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC__UGGGAUCUCCGA__CAG .................(((((((((..................))))))((((((.((((((.....)))))).....)))))).)))....... (-23.75 = -24.50 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:20 2006