| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,902,412 – 12,902,512 |
| Length | 100 |
| Max. P | 0.698436 |
| Location | 12,902,412 – 12,902,512 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Mean single sequence MFE | -29.63 |
| Consensus MFE | -17.72 |
| Energy contribution | -19.08 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.698436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12902412 100 - 20766785 AUUG--UGGGGUUAAGUGGGCUGUG--UGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU-CGUUAG-CAGGAGCUGGUAAGCUGAGGUCAAUCAAAUCGCAGGCA ....--............(.(((((--(((((.......)))))...(((((((.(((((-.(..((-(....)))..))))))...)))))))....))))).). ( -32.60) >DroPse_CAF1 24702 83 - 1 AUUGUCUGGGGUUAAGUGGUACAUC--GGU---AAAUGGGCGCCAGGGGGUGCCAUGUGUGUGUGUGUGA--------------GGGGCCGUUUCAAGC----ACA .(((.(((..((........))..)--)))---))...((((((....)))))).......(((((.(((--------------((.....))))).))----))) ( -21.30) >DroSec_CAF1 25699 100 - 1 AUUG--UGGGGUUAAGUGGGCUGUG--UGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU-CGUUAG-CAGGAGCUGGUAAGCUGAGGUCAAUCAAAUCACAGGCA ....--............(.(((((--(((((.......)))))...(((((((.(((((-.(..((-(....)))..))))))...)))))))....))))).). ( -33.00) >DroSim_CAF1 13280 100 - 1 AUUG--UGGGGUUAAGUGGGCUGUG--UGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU-CGUUAG-CAGGAGCUGGUAAGCUGAGGUCAAUCAAAUCGCAGGCA ....--............(.(((((--(((((.......)))))...(((((((.(((((-.(..((-(....)))..))))))...)))))))....))))).). ( -32.60) >DroEre_CAF1 27681 100 - 1 AUUG--UGGGGUUAAGUGGGUUGUG--UGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU-CGUUAG-CAGGAGCUGGUAAGCUGAGGUCAAUCAAAUCGCAGGCA ....--............(.(((((--(((((.......)))))...(((((((.(((((-.(..((-(....)))..))))))...)))))))....))))).). ( -30.00) >DroYak_CAF1 26954 102 - 1 AUUG--UGGGGUUAAGUGGGCUGUGUGUGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU-CGUUAG-CAGGAGCUGGUAAGCUGAGUUCAAUCAAAUCGCAGGCA ....--............(.(((((..(((((.......)))))...((((((..(((((-.(..((-(....)))..))))))....))))))....))))).). ( -28.30) >consensus AUUG__UGGGGUUAAGUGGGCUGUG__UGUGCGGAAUGAGCAUAAUGGAUUGACAGGCUU_CGUUAG_CAGGAGCUGGUAAGCUGAGGUCAAUCAAAUCGCAGGCA ..................(.(((((..(((((.......)))))...(((((((.(((((..(((.......)))....)))))...)))))))....))))).). (-17.72 = -19.08 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:13 2006