Locus 3914

Sequence ID 2R_DroMel_CAF1
Location 12,898,737 – 12,898,833
Length 96
Max. P 0.505726
window6319

overview

Window 9

Location 12,898,737 – 12,898,833
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 92.52
Mean single sequence MFE -21.00
Consensus MFE -18.51
Energy contribution -18.73
Covariance contribution 0.22
Combinations/Pair 1.10
Mean z-score -1.23
Structure conservation index 0.88
SVM decision value -0.05
SVM RNA-class probability 0.505726
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12898737 96 - 20766785
UUCAACUUUAUUCCAUUGCGGCUGAGAA-CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAAAAAUCAAAUAUUUG
........((((..(((...(((((((.-.(((....)))..(((((((.((((.....)))))))))))...)))))))....)))..)))).... ( -20.70)
>DroSec_CAF1 22033 96 - 1
UUCAACUUUAUUCCAUUGUGGCUGAGAA-CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAAAAAUCAAAUAUUUG
........((((..(((...(((((((.-.(((....)))..(((((((.((((.....)))))))))))...)))))))....)))..)))).... ( -20.70)
>DroSim_CAF1 9494 96 - 1
UUCAACUUUAUUCCAUUGUGGCUGAGAA-CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAAAAAUCAAAUAUUUG
........((((..(((...(((((((.-.(((....)))..(((((((.((((.....)))))))))))...)))))))....)))..)))).... ( -20.70)
>DroEre_CAF1 24115 96 - 1
UUCAACUUUAUUCCAUUGUGGCUGAGCA-CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAAAAAUCAAAUAUUUG
........((((..(((...((((((((-((....)))))..(((((((.((((.....))))))))))).....)))))....)))..)))).... ( -21.80)
>DroYak_CAF1 23264 95 - 1
UUCAACUUUAUUCCAUUGUGGCUGAGAA-CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAA-AAUCAAAUAUUUG
........((((..(((...(((((((.-.(((....)))..(((((((.((((.....)))))))))))...)))))))...-)))..)))).... ( -21.40)
>DroAna_CAF1 22948 89 - 1
-------CCCGUCCAUUGUUGCUGAAAAAGGAAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGCAUAAUUUCAGCAAA-AAUCAAAUAUUUG
-------...........(((((((((..........((((((..(((....))).))))))((...))....))))))))).-............. ( -20.70)
>consensus
UUCAACUUUAUUCCAUUGUGGCUGAGAA_CGCAUUUGUGCAUUUCGGCGAUUGCCUAAUGCAGCGUUGAAUAAUUUUAGCAAAAAAUCAAAUAUUUG
....................(((((((...(((....)))..(((((((.((((.....)))))))))))...)))))))................. (-18.51 = -18.73 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:10 2006