Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,895,389 – 12,895,491 |
Length | 102 |
Max. P | 0.957846 |
Location | 12,895,389 – 12,895,491 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -19.09 |
Consensus MFE | -15.58 |
Energy contribution | -15.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.22 |
Structure conservation index | 0.82 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12895389 102 + 20766785 UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCACCGCCUCACUGCCACAGUACACCACCCCACUUGCCACGCCCACG ......((.(((((((...........((((.(((......)))....(((((.............))))).)))).............))))))).))... ( -23.67) >DroSec_CAF1 18599 78 + 1 UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCA------------------------CCCCACUUGCCACGCCCCGG .....(((.(((((((..((.........))...((((((.......)))))).....------------------------.......)))))))..))). ( -17.90) >DroSim_CAF1 6086 78 + 1 UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCA------------------------CCCCACUUGCCACGCCCCGG .....(((.(((((((..((.........))...((((((.......)))))).....------------------------.......)))))))..))). ( -17.90) >DroEre_CAF1 18411 88 + 1 UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCGCCGCC-------------ACACCACCCCAC-AGCCACGCCCCCG ......((.((((((..............((((((......))).)))(((......)))...-------------............-.)))))))).... ( -18.80) >DroYak_CAF1 19892 82 + 1 UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAUACCCACC-------------------CGCCCCCAC-UGCCACGCCCCCG ......((.(((((((.............((((((......))).)))(((.........-------------------.))).....-))))))))).... ( -17.20) >consensus UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCACC___________________C__CCCCACUUGCCACGCCCCCG ......((.((((((...((.........))...((((((.......)))))).....................................)))))).))... (-15.58 = -15.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:09 2006