Locus 3910

Sequence ID 2R_DroMel_CAF1
Location 12,887,890 – 12,887,985
Length 95
Max. P 0.883746
window6314

overview

Window 4

Location 12,887,890 – 12,887,985
Length 95
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.59
Mean single sequence MFE -15.80
Consensus MFE -12.70
Energy contribution -12.70
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 0.80
SVM decision value 0.93
SVM RNA-class probability 0.883746
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12887890 95 + 20766785
CAA-AAACUA--UGUCUGAAACACAACCA----------ACCAACUUUCAUGCCCA----------AUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
...-.(((((--(((((((((........----------......))))).)....----------))))))))..((((((((.....))))).)))((((((....)))))).... ( -17.04)
>DroSec_CAF1 11174 95 + 1
CAA-AAACUA--UGUCUAAAACACAACCA----------ACCAACUUUCAUGCCCA----------AUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
...-.(((((--(((..............----------.................----------))))))))..((((((((.....))))).)))((((((....)))))).... ( -15.68)
>DroEre_CAF1 11050 91 + 1
CAA-AAACUA--UGUCUGAAACACAAC--------------CAACUUUCAUGCCCA----------AUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
...-.(((((--(((((((((......--------------....))))).)....----------))))))))..((((((((.....))))).)))((((((....)))))).... ( -17.40)
>DroYak_CAF1 12332 94 + 1
CAACAAACUA--UGUCUGAAACACAAC--------------CAACUUUCAUGCCCAA--------AAUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
.....(((((--(((((((((......--------------....))))).).....--------.))))))))..((((((((.....))))).)))((((((....)))))).... ( -16.60)
>DroMoj_CAF1 14390 82 + 1
UGA-AAUCAAAUCUUCUCAUACAAAAU-----------------------------------CUAUAUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
...-.............((((....((-----------------------------------((((.((.((((..((((((((.....))))).))).)))).)))))))).)))). ( -14.10)
>DroAna_CAF1 11266 113 + 1
CCA-AAAAUA--UGUCUGAAACACAACCACAACAAUACAAAAAACUCUCAUGCCCUAUCAAUC--UAUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
...-......--...........................................(((..(((--(((..((((..((((((((.....))))).))).))))...))))))..))). ( -14.00)
>consensus
CAA_AAACUA__UGUCUGAAACACAAC______________CAACUUUCAUGCCCA__________AUAUAGUUACUGGACACCCUCCCGGUGUGCCAAGAUUUUAAUAGAUCUAUGU
............................................................................((((((((.....))))).)))((((((....)))))).... (-12.70 = -12.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:05 2006