Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,877,908 – 12,878,003 |
Length | 95 |
Max. P | 0.962105 |
Location | 12,877,908 – 12,878,003 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 72.09 |
Mean single sequence MFE | -44.36 |
Consensus MFE | -19.38 |
Energy contribution | -21.16 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.24 |
Mean z-score | -2.12 |
Structure conservation index | 0.44 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12877908 95 - 20766785 CAUGGCAUAGUUGAUGCGCUGCUGAGUCUGGGCCUGAACUUGGGCCUGUGCCUGGGCCUGGGCCUGAA------CCUGAGCUUGGGCC------UGGGCUUGAGCCU ....((((.....))))...(((.((...((((((......))))))..(((..((((..((((....------...).)))..))))------..))))).))).. ( -42.80) >DroPse_CAF1 1067 74 - 1 CAUGGCAUAGUUGAUGCGCUGCAUACU---------------GGCCUGUGCCUGGGCCUGGGCCUGA------------GCCUGGGCC------UGGGCCUGAGCCU ....((((.....))))..........---------------((((.(.(((..((((..(((....------------)))..))))------..)))).).))). ( -37.00) >DroSec_CAF1 1046 101 - 1 CAUGGCAUAGUUGAGGCGCUGCUGAGUCUGAGCCUGAGCUUGGGCCUGUGCUUGGGCCUGAACCUGAGCUUGGGCCUGGGCUUGAGCC------UGGGCUUGUGCCU ...(((((((((.(((((((.(.......))))..(((((..((((((.(((..((......))..))).))))))..)))))..)))------).))).)))))). ( -53.00) >DroEre_CAF1 1106 101 - 1 CAUGGCAUAGUUGAUGCGCUGCUGAGCCUGAGCCUGAGCCUGAGCUUGGGCCUGCGCCUGCGCCUGGGCCUGAACCUGAGCUUGAGCC------UGGGCCUGGGCCU ...((((..((....))..))))..((((..((((..((..(((((((((((((((....)))..))))))......))))))..)).------.))))..)))).. ( -43.10) >DroYak_CAF1 1106 101 - 1 AAUGGCAUAGUUGAUGCGCUGCUGAGCCAGAGCUUGCGCCUGAGCCUGGGCCUGAACCUGAACCUGUGCCUGA------GCUUGGGCCUGAGCUUGGGCUUGGGCCU ...(((.((((......))))(..((((.(((((((.(((..(((..(((((.............).))))..------)))..))).))))))).))))..)))). ( -45.92) >consensus CAUGGCAUAGUUGAUGCGCUGCUGAGUCUGAGCCUGAGCCUGGGCCUGUGCCUGGGCCUGAGCCUGAGC_UG__CCUG_GCUUGGGCC______UGGGCUUGAGCCU ...(((.(((((.(.((((.(((.((.((.......)).)).)))..)))).).)).))).)))...............(((((((((........))))))))).. (-19.38 = -21.16 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:56 2006