Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,877,606 – 12,877,698 |
Length | 92 |
Max. P | 0.774721 |
Location | 12,877,606 – 12,877,698 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.82 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -19.38 |
Energy contribution | -19.25 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.36 |
Mean z-score | -1.18 |
Structure conservation index | 0.76 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12877606 92 - 20766785 -GCUGACCA---UUGUUAAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCAUUGGGCAGGGGGAGAAGACUAUCGCCUU-----GG -..((((.(---((.....))).))))..((((...(((((....)))))..))))((((((....))))))((((.((........)).))))-----.. ( -25.40) >DroSec_CAF1 747 92 - 1 -GCUGACCA---UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUGUCGCCCAGGCCAUUGGGCAAGGGCAGAAGACUAUCGCCUU-----GU -(((((...---....)))(((.(((...((((...(((((....)))))..))))((((..(((....)))..))))....))).)))))...-----.. ( -26.30) >DroEre_CAF1 813 92 - 1 -GCUGGCCA---UUGUUCAGAUUGUUGUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCGUUGGGCAGGGGUAGAAGACUGUCGCCUU-----GG -...(((((---.(.(((...........((((...(((((....)))))..))))((((..(((....)))..)))).))).).))..)))..-----.. ( -27.60) >DroWil_CAF1 813 90 - 1 GAUUGAUCAUGCUUGUUCAAAUUAUUAUUGAUAUAGGAUAAAUAGUUAUUAUUGUC---AUUGCCAUUGGGCAAAGGUAAAAGGCUAUUAGUA-------- .((((((...((((..((..........(((((...(((((....)))))..))))---)(((((....))))).))....)))).)))))).-------- ( -16.30) >DroYak_CAF1 807 92 - 1 -UCUGACCA---UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCUGGCCAUUGGGCAGGGGCAGAAGACUAUCGCCUU-----GG -.....(((---..((...(((.(((...((((...(((((....)))))..))))(((((.(((....))).)))))....))).)))))..)-----)) ( -29.10) >DroAna_CAF1 787 94 - 1 ----GGCCA---UUGUUAAGAUUAUUGUUGAUGUAGGACAGAUAGUUGUUGUUAUCGCCCAGGCCAUUCGGCAGGGGCAGGAGGCUUUCAGCCACCGAAGU ----((((.---.................((((.(.(((((....))))).)))))((((..(((....)))..)))).)).(((.....))).))..... ( -28.20) >consensus _GCUGACCA___UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCAUUGGGCAGGGGCAGAAGACUAUCGCCUU_____GG ...................(((.(((...((((...(((((....)))))..))))((((..(((....)))..))))....))).)))............ (-19.38 = -19.25 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006