Locus 3900

Sequence ID 2R_DroMel_CAF1
Location 12,868,991 – 12,869,103
Length 112
Max. P 0.645810
window6296

overview

Window 6

Location 12,868,991 – 12,869,103
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -38.20
Consensus MFE -31.07
Energy contribution -31.27
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.81
SVM decision value 0.23
SVM RNA-class probability 0.645810
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12868991 112 + 20766785
--------GAUAACCAUAACGAUAACGAUUACGAACCCGAAUCCGAUCGCAAAUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
--------...........((((...((((.((....))))))..))))......(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). ( -39.70)
>DroPse_CAF1 1562 95 + 1
------------ACCACCACGAUCACGAUCACGAUCACG-------------AUUCAGGUGUGUCGCGAGUUCCUGCGCGGCGCCUGCAAGCGGGCCGAAUCCGAAUGCCGGUUCGCACA
------------..((((..((((..(((....)))..)-------------)))..)))).((((((........))))))(((((....)))))((((.(((.....))))))).... ( -31.90)
>DroSec_CAF1 2007 112 + 1
--------GAUAACCAUAACGAUAACGAUUAUGAACCCGAAUCCGAUCGCAAAUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
--------...........((((...((((.((....))))))..))))......(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). ( -37.60)
>DroSim_CAF1 2004 112 + 1
--------GAUAACCAUAACGAUAACGAUUAUGAACCCGAAUCCGAUCGCAAAUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
--------...........((((...((((.((....))))))..))))......(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). ( -37.60)
>DroEre_CAF1 2398 120 + 1
GAUAAUGCGAUUACGAUAACGAUAACGAUAACGAAUCCGAAUCCGAUUGCAAGUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
(((..(((((((..(((...(((..((....)).)))...))).))))))).)))(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). ( -40.80)
>DroYak_CAF1 2046 102 + 1
GAUAUUGCGAUAACGAUAAC------------------GAAUCCGAUUGCAAAUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
(((.(((((((...(((...------------------..)))..))))))))))(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). ( -41.60)
>consensus
________GAUAACCAUAACGAUAACGAUUACGAACCCGAAUCCGAUCGCAAAUCCAGGUGUGCCGCGAAUUCCUGCGCGGCGCCUGCAAACGGGCGGAAUCCGAGUGCCGGUUCGCCCA
.......................................................(((((..((((((........))))))))))).....(((((((..(((.....)))))))))). (-31.07 = -31.27 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:48 2006