Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,256,507 – 1,256,638 |
Length | 131 |
Max. P | 0.999561 |
Location | 1,256,507 – 1,256,603 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -23.98 |
Energy contribution | -24.58 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -2.58 |
Structure conservation index | 0.89 |
SVM decision value | 3.72 |
SVM RNA-class probability | 0.999561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1256507 96 - 20766785 AGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUUUACAAUUCCUUUGUGUUUGUAGGCUGUAUUUGUUGAUU ...((((((((((((((.((..(((((((....--..)))))))..)).)))))))((..(((((.....)))))..))..))))))).......... ( -28.50) >DroSec_CAF1 8197 96 - 1 AGUUGCAGUCGGAGUUACAGUGGCAGUUGCGGC--UGCAAUUGUUGUUCUGAUUUCCAUUUACAAUUCCUUUGUGUUUGUAGGCUGUAUUUGUUGAUU ...((((((((((((((.((..((((((((...--.))))))))..)).)))))))((..(((((.....)))))..))..))))))).......... ( -31.50) >DroSim_CAF1 14008 96 - 1 AGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUUUACAAUUCCUUUGUGUUUGUAGGCUGUAUUUGUUGAUU ...((((((((((((((.((..(((((((....--..)))))))..)).)))))))((..(((((.....)))))..))..))))))).......... ( -28.50) >DroEre_CAF1 12336 96 - 1 AGUUGCAGUUGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUUUACAAUUCCUUUGUGUUUGUGGGCUGUAUUUGUUGAUU ...((((((.((((..(((((.(((((....))--))).)))))..)))).....((((.(((((.....)))))...)))))))))).......... ( -27.60) >DroYak_CAF1 11688 97 - 1 AGUUGCAC-UGGAGGUACAGUGGCAGUUGAGGCUUUGCAAUUGUUGUGCUGAUUUUCAUUAACAAUUCCUUUGUGUUUGUAGGUUGUAUUUGUCGAUU .....(((-((......)))))((((........))))(((((..((((.(((((.((...((((.....))))...)).)))))))))....))))) ( -18.90) >consensus AGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC__UGCAAUUGUUGUUCUGAUUUCCAUUUACAAUUCCUUUGUGUUUGUAGGCUGUAUUUGUUGAUU ...((((((((((((((.((..(((((((........)))))))..)).)))))))((..(((((.....)))))..))..))))))).......... (-23.98 = -24.58 + 0.60)
Location | 1,256,545 – 1,256,638 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -31.60 |
Consensus MFE | -26.84 |
Energy contribution | -27.48 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.03 |
Mean z-score | -2.80 |
Structure conservation index | 0.85 |
SVM decision value | 3.19 |
SVM RNA-class probability | 0.998704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1256545 93 - 20766785 UUGCGAUUGCGUUUGGGCUGAGUGUACAUUGUUGCAGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUU .((((((((((..((..(.....)..))....))))))))))(((((((..(((((.(((((....))--))).)))))..)))))))....... ( -34.20) >DroSec_CAF1 8235 93 - 1 UUGCGAUUGCGUUUGGGCCGAGUGUACAUUGUUGCAGUUGCAGUCGGAGUUACAGUGGCAGUUGCGGC--UGCAAUUGUUGUUCUGAUUUCCAUU .((((((((((..((..(.....)..))....))))))))))(((((((..(((((.(((((....))--))).)))))..)))))))....... ( -33.00) >DroSim_CAF1 14046 93 - 1 UUGCGAUUGCGUUUGGGCCGAGUGUACAUUGUUGCAGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUU .((((((((((..((..(.....)..))....))))))))))(((((((..(((((.(((((....))--))).)))))..)))))))....... ( -33.00) >DroEre_CAF1 12374 93 - 1 UUGCGAUUGCGUUCGGGCUGAGUGUACAUUGUUGCAGUUGCAGUUGGAGUUACAGUGGCAGUUGAGGC--UGCAAUUGUUGUUCUGAUUUCCAUU .((((((((((.....((.....)).......))))))))))((..(((..(((((.(((((....))--))).)))))..)))..))....... ( -30.00) >DroYak_CAF1 11726 94 - 1 UUGCGAUUGCGUUCGGGCUGAGUGUACAUUGUUGCAGUUGCAC-UGGAGGUACAGUGGCAGUUGAGGCUUUGCAAUUGUUGUGCUGAUUUUCAUU .((((((((((.....((.....)).......)))))))))).-(((((((.((((((((((((........))))))))..))))))))))).. ( -27.80) >consensus UUGCGAUUGCGUUUGGGCUGAGUGUACAUUGUUGCAGUUGCAGUCGGAGUUACAGUGGCAGUUGAGGC__UGCAAUUGUUGUUCUGAUUUCCAUU .((((((((((..((..(.....)..))....))))))))))...(((((((.((..(((((((........)))))))..)).))))))).... (-26.84 = -27.48 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:22 2006