Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,865,613 – 12,865,733 |
Length | 120 |
Max. P | 0.583787 |
Location | 12,865,613 – 12,865,733 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.39 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -22.65 |
Energy contribution | -23.53 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.84 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583787 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12865613 120 + 20766785 UUAAGCACAACAAUUUGUGUUAAUCAACACAGGACCCGCAAACAGGAGUAAAUGGCAUUAACAUAAAUUUGUUUCUAGUAAUUUAUUUAGUGCGACAAAAGCACUUCCUGACCAACACGC ...(((((((....)))))))........(((((...........((((((((.((...((((......))))....)).))))))))(((((.......)))))))))).......... ( -25.60) >DroSim_CAF1 220893 120 + 1 UUAAGCACAACAAUUUGCGUUAAUCAACACAGGACCCGCAACCAGGAGUAAAUGGCAUUAACAUAAAUUAGUUUCUAGUAAUUUAUUUAGUGCGACAAAAGCACUUCCUGGCCAACACGC ....((........(((((....((.......))..)))))((((((((...(.(((((((.((((((((.(....).))))))))))))))).).......)).)))))).......)) ( -23.80) >DroEre_CAF1 213017 120 + 1 UUAAGCACAACAAUUUGUGUUAAUCAACACCGGACCCGCAACCAGGAGUAAAUGGCAUUAACAUAAAUUUGUUUCUAGUAAUUUAUUUAGUGCGACAAAAGCACUUCCUGGGCAACACGC ...(((((((....)))))))................((..((((((((((((.((...((((......))))....)).))))))..(((((.......)))))))))))))....... ( -27.60) >DroYak_CAF1 219018 120 + 1 UUAAGCACAACAAUUUGUGUUAAUCAACACGGGAGCCGCAGCCAGGAGUAAAUGGCAUUAACAUAAAUUUGUUUCUAGUAAUUUAUUUAGUGCGACAAAAGCACUUCCUGGCCAACACGC ...(((((((....)))))))........(((...)))..(((((((((((((.((...((((......))))....)).))))))..(((((.......))))))))))))........ ( -30.30) >consensus UUAAGCACAACAAUUUGUGUUAAUCAACACAGGACCCGCAACCAGGAGUAAAUGGCAUUAACAUAAAUUUGUUUCUAGUAAUUUAUUUAGUGCGACAAAAGCACUUCCUGGCCAACACGC ....((.......((((((((....))))))))........((((((((((((.((...((((......))))....)).))))))..(((((.......))))))))))).......)) (-22.65 = -23.53 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:42 2006