Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,864,789 – 12,864,895 |
Length | 106 |
Max. P | 0.852642 |
Location | 12,864,789 – 12,864,895 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.40 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -21.45 |
Energy contribution | -21.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.80 |
Structure conservation index | 0.93 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12864789 106 + 20766785 AUUUUGCUGGUUGCCUUGCUUGCUGGUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC .....((.(((((((..((..((..(((((((..((..((.......))..))...(((((((....)))))))..)))))))..))..))..)))..)))).)). ( -23.20) >DroSim_CAF1 220072 106 + 1 AUUUUGCUGGUCGCCUUGCUUGCUGGUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC .....((.(((((((..((..((..(((((((..((..((.......))..))...(((((((....)))))))..)))))))..))..))..)))..)))).)). ( -24.70) >DroEre_CAF1 212205 101 + 1 AUUUUGCUGGUCGCCUUGCU-----GUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC ........(((.(((..(((-----(...(((((((..((...........(((..(((((((....)))))))...)))))..))))))).))))..)))..))) ( -21.00) >DroYak_CAF1 218194 101 + 1 AUUUUGCUGGUCGCCUUGCU-----GCAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGCUUGGCCUGCC ........(((.(((..(((-----(((.(((((((..((.......))..(((..(((((((....)))))))...)))))))))).)))..)))..)))..))) ( -23.20) >consensus AUUUUGCUGGUCGCCUUGCU_____GUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC ........(((.(((..(((....((((.(((((((..((.......))..(((..(((((((....)))))))...)))))))))).)))).)))..)))..))) (-21.45 = -21.57 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:41 2006