| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,863,489 – 12,863,589 |
| Length | 100 |
| Max. P | 0.982313 |
| Location | 12,863,489 – 12,863,589 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.11 |
| Mean single sequence MFE | -26.93 |
| Consensus MFE | -24.42 |
| Energy contribution | -24.92 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12863489 100 + 20766785 AGCAGCAAGAAAGUGUUGCAUAUCUACAGGCGCCAGCCACAAGAAAGAAAUUGCCCCGAGAAAUGGGAAAGUGGAUGUGGAGGUGAGGCUGGGAGCU-------GGA ..((((.....(((.(..(...(((((((((....)))...........(((..(((.(....))))..)))...)))))).)..).)))....)))-------).. ( -29.40) >DroSim_CAF1 218784 107 + 1 AGCAGCAAGAAAGUGUUGCAUAUCUACGGGCGCCAGCCACAAGAAAGAAAUUGCCCCGGGAAAUGGGAAAGUGGAUGUGGAGGUGAGGCUGGGAGGUGGGAGGUGGA .((((((......)))))).(((((.(.(.(.((((((.((........(((..((((.....))))..)))...........)).))))))..).).).))))).. ( -30.71) >DroEre_CAF1 210960 83 + 1 AGCAGCAAGAAAGUGUUGCAUAUCUACGGGCGCCAGCCACAAGAAAGAAAUUGCCCCGGGAAAUGGGAAAGUGGAGGUGGAA-----------A------------- .((((((......))))))...((....))((((..((((....((....))..((((.....))))...)))).))))...-----------.------------- ( -23.10) >DroYak_CAF1 216914 89 + 1 AGCAGCAAGAAAGUGUUGCAUAUCUACGGGCGCCAGCCACAAGAAAGAAAUUGCCCCGGGAAAUGGGAAAGUGGAGGUGGAA-----------AGCG-------GCA .((((((......)))))).........(.(((...((((.........(((..((((.....))))..)))....))))..-----------.)))-------.). ( -24.52) >consensus AGCAGCAAGAAAGUGUUGCAUAUCUACGGGCGCCAGCCACAAGAAAGAAAUUGCCCCGGGAAAUGGGAAAGUGGAGGUGGAA___________AGCU_______GGA .((((((......))))))((((((((.(((....)))................((((.....))))...))))))))............................. (-24.42 = -24.92 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:36 2006