Locus 3891

Sequence ID 2R_DroMel_CAF1
Location 12,863,343 – 12,863,452
Length 109
Max. P 0.998729
window6284

overview

Window 4

Location 12,863,343 – 12,863,452
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.25
Mean single sequence MFE -32.42
Consensus MFE -17.75
Energy contribution -17.99
Covariance contribution 0.24
Combinations/Pair 1.23
Mean z-score -3.01
Structure conservation index 0.55
SVM decision value 3.20
SVM RNA-class probability 0.998729
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12863343 109 + 20766785
UAUUUUUUUUCG--CACGCCCAAGGAG---------CGAGGCAGUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUGUGGAAAGGAAAAAUGUGGUGUGGGGGCG
..((((((((((--((((((((..(((---------((...(((((((...(((....)))...))))).))....)))))..)).)))))))))))))))).................. ( -36.30)
>DroSim_CAF1 218660 90 + 1
UAUUUU-UUUCG--CACGCCCAAGGAG---------CGAGGCAGUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUGUGGAAAGGAA------------------
..((((-(((((--((((((((..(((---------((...(((((((...(((....)))...))))).))....)))))..)).))))))))))))))).------------------ ( -35.40)
>DroEre_CAF1 210818 105 + 1
--UUUUUUUUCG--CACGCCCAAGGAG---------CGAGGCAGUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUGUGGAAGGAAAAAAUGGGG--UGGGGGCA
--((((((((((--((((((((..(((---------((...(((((((...(((....)))...))))).))....)))))..)).))))))))))))))))........--........ ( -36.00)
>DroWil_CAF1 315875 117 + 1
AACUGU-GUUCCCUGGUGCCUGGGUAGUGAGUUGCGAGAGGCAUUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUAUGGCAAAAAAAUAAAGAG--AAAAAACG
....((-.(((.((..((((((.((.((((.(((((.(((...))).))))).))))...((....(((((....))))).....)))).)).)))).........)).)--))...)). ( -22.10)
>DroYak_CAF1 216755 107 + 1
UCUUUUUUCUUG--CACGCCCAAGGAG---------CGAGGCAGUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUGUGGAAAGAAAAAAUGGGG--UGGGGGCA
..((((((((((--((((((((..(((---------((...(((((((...(((....)))...))))).))....)))))..)).)))))))...))))))))).....--........ ( -32.30)
>consensus
UAUUUUUUUUCG__CACGCCCAAGGAG_________CGAGGCAGUCAUGCAGAUUACAAUCGAAAUGACAUGAAAAUGUUUAGUGUGGCGUGUGGAAAGAAAAAAUGGGG__UGGGGGCA
...((((((((...((((((((................(((((.(((((((..((......))..)).)))))...)))))..)).))))))..)))))))).................. (-17.75 = -17.99 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:35 2006