Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,862,320 – 12,862,423 |
Length | 103 |
Max. P | 0.626771 |
Location | 12,862,320 – 12,862,423 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.70 |
Mean single sequence MFE | -21.57 |
Consensus MFE | -13.07 |
Energy contribution | -13.85 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.06 |
Mean z-score | -1.99 |
Structure conservation index | 0.61 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12862320 103 + 20766785 AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUUGUU----------------CGGCAAAAAAAAAAGGGGGAAA- .(((((((((((.....)))))).(((((((...((((((....))))))((((..((.....))..))))..))).))))----------------..)))))...............- ( -20.80) >DroGri_CAF1 247457 108 + 1 AUUUGCAUAAAAAUCCAUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGAAGCUAAACCUUUGCAAAAGGA-----C--UUGCAAAAAAAAAU----GCGA- ..((((((....................(((((.((((((.......))))))...)))))................(((((((.....-----.--))))))).....))----))))- ( -21.30) >DroSim_CAF1 217622 103 + 1 AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUUGUU----------------CGGCAAAAAAAAAAAGGGGGAA- .(((((((((((.....)))))).(((((((...((((((....))))))((((..((.....))..))))..))).))))----------------..)))))...............- ( -20.80) >DroEre_CAF1 209806 97 + 1 AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUUGUU----------------CGG--AAAAAAAA----GGGAA- .............(((.((((.(((((((((...((((((....))))))((((..((.....))..))))..))).))))----------------...--.)).))))----.))).- ( -20.90) >DroWil_CAF1 314750 120 + 1 AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGUAGCUAAAAUUGAGUAUACAGAUAAGGCUACUACAAAAAGACAGAACGAGAGA .............((((((((.......(((((.((((((.......))))))...)))))....(((((((....(((......)))....)))))))..........)))))).)).. ( -24.80) >DroYak_CAF1 215680 99 + 1 AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUUGUU----------------CGGCAAAAAAAAA----GGGAA- .(((((((((((.....)))))).(((((((...((((((....))))))((((..((.....))..))))..))).))))----------------..)))))......----.....- ( -20.80) >consensus AUUUGCAUAAAAAUCCGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUUGUU________________CGGCAAAAAAAAA____GGGAA_ .(((((............................((((((....))))))((((..((.....))..))))............................)))))................ (-13.07 = -13.85 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006