Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,861,028 – 12,861,119 |
Length | 91 |
Max. P | 0.672539 |
Location | 12,861,028 – 12,861,119 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -26.62 |
Consensus MFE | -13.00 |
Energy contribution | -14.16 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.14 |
Mean z-score | -2.62 |
Structure conservation index | 0.49 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.672539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12861028 91 - 20766785 CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA .((((..(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))))))............. ( -29.60) >DroGri_CAF1 246530 94 - 1 GUAAAAUGCAAACAAAUUUGGUAAAGGCAAAUGGUCAAUGUUUGUUUAUGCAUAGAAAGCGAGCCAAA--GGCAAAGUGCUU--UGC---CACGUAACAAA ......(((.......((((((..(((((((((.....))))))))).(((.......))).))))))--((((((....))--)))---)..)))..... ( -21.20) >DroSim_CAF1 216343 91 - 1 CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA .((((..(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))))))............. ( -29.60) >DroEre_CAF1 208530 91 - 1 CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCAAAAGUGUGUGUUGCGAGCCCGGUACAAA (((...((((((((.((((((............)))))).((((((-((((....).))---------)))))))....))).)))))....)))...... ( -22.50) >DroYak_CAF1 214342 91 - 1 CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCCAGCCCGGUACAAA (((....(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))...)))........... ( -30.20) >consensus CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU_GGCCAUAGGAGC_________CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA .......(((((((..(((((....((((((((.....))))))))..((.......))...........)))))..)))))))................. (-13.00 = -14.16 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:26 2006