Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,858,280 – 12,858,385 |
Length | 105 |
Max. P | 0.679832 |
Location | 12,858,280 – 12,858,385 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.24 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -22.23 |
Energy contribution | -21.88 |
Covariance contribution | -0.35 |
Combinations/Pair | 1.22 |
Mean z-score | -1.61 |
Structure conservation index | 0.84 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12858280 105 + 20766785 --CUUCGUUGGCC-UCCUUUCACAUUA---CAUUAU---GAUGAUUAUUUUUAUCGCCGCGUCACGCGAUAUUUUCCUGAUGUCGCCGCCUU-CUGCUCAAAU-GGCUUACAACGG---- --...(((((...-.............---......---(((((......)))))((((......((((((((.....)))))))).((...-..)).....)-)))...))))).---- ( -24.10) >DroGri_CAF1 242680 112 + 1 GCUGUUGUUGGUCCCCAUUUCAUAUUACUACAUUAUGAUGAUGAUUAUUUUUAUCGUCGCGUCACGCGAUGU--------UGUCGCCGCAGUGCCGCACUGUUAGGCUGACGAGGGCAGG (((.((((..(((.......................((((((((......))))))))(((.((((((.((.--------...)).))).))).))).......)))..)))).)))... ( -37.10) >DroSim_CAF1 213616 107 + 1 CCCUACGUUGGCC-UCCUUUCACAUUA---CAUUAU---GAUGAUUAUUUUUAUCGCCGCGUCACGCGAUAUUUUCCUGAUGUCGCCGCCUU-CUGCUCAAAU-GGCUUACAACGG---- .....(((((...-.............---......---(((((......)))))((((......((((((((.....)))))))).((...-..)).....)-)))...))))).---- ( -24.50) >DroEre_CAF1 205790 107 + 1 CCCCUCGUUGGCC-UCCUUUCACAUUA---CAUUAU---GAUGAUUAUUUUUAUCGCCGCGUCACGCGAUAUUUUCCUGAUGUCGCCGCCUU-CUGCUCAAAU-GGCUUACAGCGC---- .....(((((...-.............---......---(((((......)))))((((......((((((((.....)))))))).((...-..)).....)-)))...))))).---- ( -23.20) >DroYak_CAF1 211433 107 + 1 CCCAUCGUUGGCC-UCCUUUCACAUUA---CAUUAU---GAUGAUUAUUUUUAUCGCCGCGUCACGCGAUAUUUUCCUGAUGUCGCCGCCUU-CUGCUCAAAU-GGCUUACAACGG---- .....(((((...-.............---......---(((((......)))))((((......((((((((.....)))))))).((...-..)).....)-)))...))))).---- ( -24.10) >consensus CCCUUCGUUGGCC_UCCUUUCACAUUA___CAUUAU___GAUGAUUAUUUUUAUCGCCGCGUCACGCGAUAUUUUCCUGAUGUCGCCGCCUU_CUGCUCAAAU_GGCUUACAACGG____ .....(((((.............................(((((......)))))(((.......((((((((.....)))))))).((......)).......)))...)))))..... (-22.23 = -21.88 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:22 2006