Locus 3882

Sequence ID 2R_DroMel_CAF1
Location 12,853,890 – 12,853,980
Length 90
Max. P 0.993293
window6269

overview

Window 9

Location 12,853,890 – 12,853,980
Length 90
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 92.00
Mean single sequence MFE -21.80
Consensus MFE -21.67
Energy contribution -21.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.99
SVM decision value 2.39
SVM RNA-class probability 0.993293
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12853890 90 - 20766785
CAAAGCAAAAGUUGUUGGCAACACACACA----------CACGCACACAUGUGCAGCCAGUGAAAGUUACAAAUAGAGUUGCCAUAAAAUUUCAUAUGCU
...((((.(((((..(((((((.......----------...((((....)))).....((((...)))).......)))))))...)))))....)))) ( -22.00)
>DroSec_CAF1 197612 100 - 1
CAAAGCAAAAGUUGUUGGCAACCCACACACAAGCACACAAACGCACACAUGUGCAGCCAGUGAAAGUUACAAAUAGAGUUGCCAUAAAAUUUCAUAUGCU
...((((.(((((..(((((((.(..................((((....)))).....((((...)))).....).)))))))...)))))....)))) ( -21.70)
>DroSim_CAF1 206682 100 - 1
CAAAGCAAAAGUUGUUGGCAACCCACACACAAGCACACACACGCACACAUGUGCAGCCAGUGAAAGUUACAAAUAGAGUUGCCAUAAAAUUUCAUAUGCU
...((((.(((((..(((((((.(..................((((....)))).....((((...)))).....).)))))))...)))))....)))) ( -21.70)
>consensus
CAAAGCAAAAGUUGUUGGCAACCCACACACAAGCACACACACGCACACAUGUGCAGCCAGUGAAAGUUACAAAUAGAGUUGCCAUAAAAUUUCAUAUGCU
...((((.(((((..(((((((.(..................((((....)))).....((((...)))).....).)))))))...)))))....)))) (-21.67 = -21.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:20 2006