| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,849,538 – 12,849,637 |
| Length | 99 |
| Max. P | 0.847293 |
| Location | 12,849,538 – 12,849,637 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 79.45 |
| Mean single sequence MFE | -18.66 |
| Consensus MFE | -14.30 |
| Energy contribution | -13.97 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.847293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12849538 99 - 20766785 GCUAAUUGCGUGGCAUUCUUCGCUUACGGGAUAUGUCUUCAUAUAGAAAAAAAAAAACACCGAGCAUACCAUGCGUAUGGCACCCCAA-ACCAAAAAAUA ((((..(((((((.((.....(((..(((.(((((....)))))...............)))))))).)))))))..)))).......-........... ( -18.89) >DroSim_CAF1 201758 76 - 1 GCUAAUUGCGCGACAUUCUUCGCUUACGGGAUAUGUCUUCAUAUA-----------------------CCAUGCGUAUGGCACCCCAA-ACCAAAAAAUA ((((..(((((((......))))....((.(((((....))))).-----------------------))..)))..)))).......-........... ( -17.60) >DroEre_CAF1 196947 93 - 1 GCUAAUUGCGCGGCAUUCUCCGCUUACGGGACAUGUCUUCAUAUACAAAAA-------ACUGAACAUGCCAUGCGUAUGGCACCCCAAAACCAAAAAAUA ((((..(((((((......)))).....((.(((((..(((..........-------..))))))))))..)))..))))................... ( -19.50) >consensus GCUAAUUGCGCGGCAUUCUUCGCUUACGGGAUAUGUCUUCAUAUA_AAAAA_______AC_GA_CAU_CCAUGCGUAUGGCACCCCAA_ACCAAAAAAUA ((.....))((((......))))....((((((((....)))))...........................(((.....))).))).............. (-14.30 = -13.97 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:17 2006