Locus 3879

Sequence ID 2R_DroMel_CAF1
Location 12,848,523 – 12,848,617
Length 94
Max. P 0.694357
window6264

overview

Window 4

Location 12,848,523 – 12,848,617
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.74
Mean single sequence MFE -23.00
Consensus MFE -21.96
Energy contribution -22.56
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.13
Structure conservation index 0.95
SVM decision value 0.34
SVM RNA-class probability 0.694357
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12848523 94 - 20766785
CUCGGGUUAAGCCCGAGUAUUGAUGGACAGCAAGGAAUCGGGAGUAGAUCACACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAAAAACCAGC
....((((...(((((((((((((((.(.....).....((((...............))))...))))))))))))....)))...))))... ( -23.76)
>DroSec_CAF1 192304 94 - 1
CUCGGGUUAAGCCCGAGUAUUGAUGGACAGCAAGGAAUCGGGAGUAGAUCACACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAAAAACCAGC
....((((...(((((((((((((((.(.....).....((((...............))))...))))))))))))....)))...))))... ( -23.76)
>DroSim_CAF1 200736 94 - 1
CUAGGGUUAAGCCCGAGUAUUGAUGGACAGCAAGGAAUCGGGAGUAGAUCACACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAAAAACCAGC
....((((...(((((((((((((((.(.....).....((((...............))))...))))))))))))....)))...))))... ( -23.76)
>DroEre_CAF1 195941 94 - 1
CUCGGGUUAAGCCCGAGUAUUGAUGGACAGCCGGGAAUCGGGAGUAGAUCAGACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAGAAACCAGU
....((((...(((((((((((((((......((((...((............))...))))...))))))))))))....)))...))))... ( -25.60)
>DroYak_CAF1 200374 94 - 1
CUCGGGUUAAGCCCCAGCAUUGAUGGACAGCCAGGAAUCGGGAGUAGAUCAGACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAAACACCAGC
...(((((..(((((.(.(((..(((....)))..))))))).)).............((((.((.((........)))).))))))).))... ( -18.10)
>consensus
CUCGGGUUAAGCCCGAGUAUUGAUGGACAGCAAGGAAUCGGGAGUAGAUCACACCAAAUCCCAUAUCAUUAAUACUUGUAAGGGAAAAACCAGC
....((((...(((((((((((((((.(.....).....((((...............))))...))))))))))))....)))...))))... (-21.96 = -22.56 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:16 2006