Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,842,463 – 12,842,556 |
Length | 93 |
Max. P | 0.865314 |
Location | 12,842,463 – 12,842,556 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.93 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -25.46 |
Energy contribution | -26.06 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.81 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12842463 93 - 20766785 GUUCCAUAAUGGCUAAGAGGAAAUCGGAGCGCCGGCUGC---AGUUAGCCAUAUGCCGAUGAUUAGUUGGCAGGCGGCAAAAAGUGGGCCUUAACA (..((((....(((..((.....))..)))((((((((.---...)))))...(((((((.....)))))))...))).....))))..)...... ( -31.70) >DroSec_CAF1 186230 93 - 1 GUUCCAUACUGGCUAAGAGGAAAUCGGAGCGCCGGCUGC---AGUUAGCCAUAUGCCAAUGAUUAGUUGGCAGGCGGCAAAAAGUGGGCCUAAACC (..((((....(((..((.....))..)))((((((((.---...)))))...(((((((.....)))))))...))).....))))..)...... ( -32.00) >DroSim_CAF1 194830 93 - 1 GUUCCAUACUGGCUAAGAGGAAAUCGGAGCGCCGGCUGC---AGUUAGCCAUAUGCCGAUGAUUAGUUGGCAGGCGGCAAAAAGUGGGCCUAAACC (..((((....(((..((.....))..)))((((((((.---...)))))...(((((((.....)))))))...))).....))))..)...... ( -31.70) >DroEre_CAF1 190009 96 - 1 CUUCCAUACUGGCUAAGAGGAAAUCGGAGCAGCGGCUGCAGCAGUUAGCCAUAUGCCAAUGAUUAGUUGGCAGGCGGCAAGAAGUGGGCCUAAGCC ((((...(((((((..((.....))..))).((....))..))))..(((...(((((((.....)))))))...)))..))))..(((....))) ( -28.90) >DroYak_CAF1 194332 93 - 1 GUUCCAUACUGGCUAAGAGCACAGUGGAGCAGCGGCUGC---AGUUAGCCAUAUGCCAAUGAUUAGUUGGCAGGCGGAAAGAAGUGGGCCUAAACC (((((..((((((.....)).)))))))))...((((.(---(.((..((...(((((((.....)))))))...))....)).))))))...... ( -32.60) >consensus GUUCCAUACUGGCUAAGAGGAAAUCGGAGCGCCGGCUGC___AGUUAGCCAUAUGCCAAUGAUUAGUUGGCAGGCGGCAAAAAGUGGGCCUAAACC ..(((((....(((..((.....))..)))((((((((.......)))))...(((((((.....)))))))...))).....)))))........ (-25.46 = -26.06 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:14 2006