Locus 3876

Sequence ID 2R_DroMel_CAF1
Location 12,837,282 – 12,837,382
Length 100
Max. P 0.655793
window6261

overview

Window 1

Location 12,837,282 – 12,837,382
Length 100
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 80.46
Mean single sequence MFE -31.97
Consensus MFE -23.70
Energy contribution -25.81
Covariance contribution 2.11
Combinations/Pair 1.06
Mean z-score -1.58
Structure conservation index 0.74
SVM decision value 0.26
SVM RNA-class probability 0.655793
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12837282 100 - 20766785
CAGAACAAAGCG-AAAAAUUUCGUAUGCGAACGACUUUGGCCUGUACUCUCGAGAGUGGGUGGGAAAUGGGGGCGGGUUGGUCCACUCACUCCACUCCACC
(((..(((((((-......((((....)))))).)))))..)))(((((....)))))((((((...(((((..((((......)))).))))).)))))) ( -32.50)
>DroSec_CAF1 181153 100 - 1
CAGAACAAAGCG-AAAAAUUUCGUAUGCGAACGACUUUGGCCUGUACUCUCGGGAGUGGGUGGGAAAUGAGGGCGGGUUGGUCCACCCACUCCAGCCCACC
(((..(((((((-......((((....)))))).)))))..)))(((((....)))))((((((...((.(((.((((......)))).))))).)))))) ( -37.50)
>DroEre_CAF1 184121 78 - 1
CAGAACAAAGCGGAAAAAUUUCGUAUGCGAACGACUUUGGCCUGUACUCUCGAGAGUGGGUGG------------------UCCGCC-----CACUCCACC
(((..(((((((.......((((....)))))).)))))..))).......(.(((((((((.------------------..))))-----))))))... ( -25.91)
>consensus
CAGAACAAAGCG_AAAAAUUUCGUAUGCGAACGACUUUGGCCUGUACUCUCGAGAGUGGGUGGGAAAUG_GGGCGGGUUGGUCCACCCACUCCACUCCACC
(((..(((((((.......((((....)))))).)))))..)))(((((....)))))((((((...((.(((.((((......)))).))))).)))))) (-23.70 = -25.81 +   2.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:13 2006