Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,835,162 – 12,835,267 |
Length | 105 |
Max. P | 0.940176 |
Location | 12,835,162 – 12,835,267 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.77 |
Mean single sequence MFE | -31.00 |
Consensus MFE | -23.58 |
Energy contribution | -22.70 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -2.16 |
Structure conservation index | 0.76 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12835162 105 + 20766785 AAACUGGGAGGUGGUUAGCUAGAGGUAGCUGGGCCAUUGGGUGGUUCGCUGCCUGGUGGAUGGUGCCAGGAUGAUGCCAGAAUGGGAAAUGGCCUAAGAGGAAUG ...((...((((.(((..(((..((((.(....((((..((..(....)..))..))))..).)))).((......))....)))..))).)))).))....... ( -33.90) >DroSec_CAF1 179061 90 + 1 AAACUGGAAGGUGGUUAGCUAGAGGUGGCUGGUCCACUGUG---------------UGGAUGGUGCCAGGAUGAUGCCAGGAUGGGAAAUGGCCUAAGAGGAAUG ...((((..((((((((((((....))))))).))))).(.---------------(((......))).)......))))..((((......))))......... ( -24.70) >DroEre_CAF1 182079 100 + 1 AAACUGGGAGGUGGUUAGCUAGA--UGGCUGGGCUAUCGGGUGGUUCGUUGGC---UGGAUGGUGCCAGUGUGCUGCCAGGAUGGGAAAUGGCCUAAAAGGAAUG ...((...((((.(((((((...--.))))...(((((.((..((.(((((((---........))))))).))..))..)))))..))).))))...))..... ( -34.40) >consensus AAACUGGGAGGUGGUUAGCUAGAGGUGGCUGGGCCAUUGGGUGGUUCG_UG_C___UGGAUGGUGCCAGGAUGAUGCCAGGAUGGGAAAUGGCCUAAGAGGAAUG ...((((..((((((((((((....))))))).)))))..................(((......)))........))))..((((......))))......... (-23.58 = -22.70 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006