| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,816,774 – 12,816,883 |
| Length | 109 |
| Max. P | 0.697911 |
| Location | 12,816,774 – 12,816,883 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.38 |
| Mean single sequence MFE | -20.25 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12816774 109 - 20766785 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCGUAUCCGUUUGCUCCUCCAC-----UCCCGAUCCCAUCCCGCACCGACCAA .......(((.((((((...(((.........(((((....)))))...........(((((((....)))))))........-----....)))...)).))))..))).... ( -22.00) >DroGri_CAF1 187185 86 - 1 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCAUAUCCGUUCCC--AGCCAC-----------U--------------GCCA- .(((.....(((((((................(((((....)))))........((((....)))))))))))..--......-----------)--------------))..- ( -16.72) >DroSim_CAF1 165969 89 - 1 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCGUAUCCGUUUGCUCCUCCAC-----U--------------------ACCAA ........(((((((((((.............(((((....)))))...........(....)))))))))))).........-----.--------------------..... ( -19.20) >DroEre_CAF1 163457 101 - 1 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCGUAUCCGUUUGCUUCCCCAC------------UCCCUCCC-CUCGGACCUU .......(((((.(((................(((((....)))))...........(((((((....)))))))........------------....))).-)))))..... ( -22.60) >DroYak_CAF1 168297 108 - 1 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCGUAUCCUUUUGCGCCUCCAC-----ACCCCCUUCCGUCCC-CUCUGACCAU .........(((.((((...............(((((....)))))...............(((((......)))))......-----..........)))).-)))....... ( -18.80) >DroMoj_CAF1 267158 97 - 1 UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCAUAUCCGUUCCC--AGCCAGUUCGCUCGCACU--------------GCCA- .(((....(((((((((...............(((((....))))).......(((((....)))))........--.....)))))))))...)--------------))..- ( -22.20) >consensus UGCAUAAUCGAGCGGAUACAAUCAUUUUAAUAGACACGCCGGUGUUAUAAUUUAUAUGCAAGCGUAUCCGUUUGCUCCUCCAC_____U_____U______________ACCA_ ........(((((((((((.............(((((....)))))...........(....))))))))))))........................................ (-15.77 = -16.38 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:06 2006