Locus 3871

Sequence ID 2R_DroMel_CAF1
Location 12,804,566 – 12,804,662
Length 96
Max. P 0.769279
window6252

overview

Window 2

Location 12,804,566 – 12,804,662
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 84.40
Mean single sequence MFE -17.56
Consensus MFE -14.70
Energy contribution -14.59
Covariance contribution -0.11
Combinations/Pair 1.21
Mean z-score -1.88
Structure conservation index 0.84
SVM decision value 0.52
SVM RNA-class probability 0.769279
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12804566 96 - 20766785
UC--ACUAUCCUCGCCCCCCUCACAUUUAUUCCUCUGGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCCCCAU-ACUGGCUUUCGC
..--................(((((((((((...........)))))))))))...............(((((.(((.........-...))).))))) ( -16.90)
>DroPse_CAF1 137285 98 - 1
UCGUAAUUUCCUACCAUUGCUCACAUUUGUUCAUUUUGUUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCCUUCCCCCC-CCCCGCUACUGC
..(((((........)))))(((((((((((...........)))))))))))..............(((.((((...........-...))))))).. ( -12.54)
>DroSim_CAF1 153738 95 - 1
UC--ACUAUCCUCGCC-CCUUCACAUUUAUUCCUCUGGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCUCCAG-ACUGGCUUUCGC
..--............-..((((((((((((...........))))))))))))..............(((((.(((..((....)-)..))).))))) ( -20.10)
>DroEre_CAF1 149481 93 - 1
UC--ACUAUCCUCGCC--CUUCGCAUUUGUUCCUC-UGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCUCCAG-GCUGGCUUUCGC
..--............--.((((((((((((....-......))))))))))))..............(((((.(((..((....)-)..))).))))) ( -18.90)
>DroYak_CAF1 155753 95 - 1
UC--ACUAUCCUCGCC-CCCUCGCAUUUAUUCCACUUGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCUCCAG-GCUGGCUUUCGC
..--............-...(((((((((((...........)))))))))))...............(((((.(((..((....)-)..))).))))) ( -17.90)
>DroAna_CAF1 137773 93 - 1
UC--CCUAUC---GCC-CCUUCGCAUUUGUUCAUUUUGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCUCCAGGAAUGGCUUUCAA
..--......---...-..((((((((((((...........))))))))))))...............((((.(((.(((.....))).))).)))). ( -19.00)
>consensus
UC__ACUAUCCUCGCC_CCCUCACAUUUAUUCCUCUUGCUUCAAUAAAUGUGAAAAUUAUUAAAUUAAGUGAGUGCCUUUCUCCAG_ACUGGCUUUCGC
....................(((((((((((...........)))))))))))...............(((((.(((.............))).))))) (-14.70 = -14.59 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:05 2006