Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,798,961 – 12,799,052 |
Length | 91 |
Max. P | 0.830645 |
Location | 12,798,961 – 12,799,052 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -24.66 |
Consensus MFE | -21.53 |
Energy contribution | -21.25 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.09 |
Structure conservation index | 0.87 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.830645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12798961 91 + 20766785 GCCA---CCACCGCCC---------------CCCCCCAUUUCGCUUUCUUCUUCCUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((.---.((((((..---------------...........)).....((..........))..))))(((((((((.(((....)))..))))))).)))))..... ( -22.42) >DroSec_CAF1 143100 88 + 1 GCCA---CCACCGCCC------------------CCCAUUUCGCUUUCUUCUUCCUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((.---.((((((..------------------........)).....((..........))..))))(((((((((.(((....)))..))))))).)))))..... ( -22.70) >DroSim_CAF1 148265 85 + 1 GCCA---ACACCGCCC------------------CCCAUUUCGC---CUUCUUCCUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((.---.........------------------.......(((---(.((..........))..))))(((((((((.(((....)))..))))))).)))))..... ( -23.40) >DroEre_CAF1 143998 104 + 1 GCCC---CCAUCGCCACCCCCUCUCCCCUCUCCCCACU--UCGCUUCCUUGUUCUUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((.---.....((((((....................--..((......))((.......))..))))))(((((((.(((....)))..)))))))...)))..... ( -24.60) >DroYak_CAF1 149986 109 + 1 GCCACUGCCACUGCCACUGCCACCUCCCUCACCCCCCUUUUUGCCUUCUUGUUCUUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA ((...((((.(((((...((((((....(((.............................)))..)))))).((.((............)).)))))).).)))).)). ( -27.85) >DroAna_CAF1 132418 76 + 1 GCCA---CGCCCGG----------------------------GC--UUUUCUUCUUUUGCUGGUUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((.---(((((.(----------------------------((--............))).)..))))(((((((((.(((....)))..))))))).)))))..... ( -27.00) >consensus GCCA___CCACCGCCC__________________CCCAUUUCGCUUUCUUCUUCCUUCACUGACUGGUGGCUGCUGCAAUUUUAAUGAAGCUGCGGCAUGCGGCAAGCA (((......................................................((((....))))(((((((((.(((....)))..))))))).)))))..... (-21.53 = -21.25 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:04 2006