Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,798,302 – 12,798,411 |
Length | 109 |
Max. P | 0.600421 |
Location | 12,798,302 – 12,798,411 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -32.72 |
Consensus MFE | -24.45 |
Energy contribution | -24.87 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.05 |
Mean z-score | -1.19 |
Structure conservation index | 0.75 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600421 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12798302 109 - 20766785 CAGCGACG---ACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGAGGCAAAA-GAAAAUGCGGCACUCG-ACUGAAAGGAGCG ..((((.(---....)))))((..(((.........(((((.....)))))(((((((...(((((((..(((...)))....-.....))))))).)))-).))).))).)). ( -31.90) >DroVir_CAF1 190686 107 - 1 CGCCAACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGCGGCAGAA-AAAAAUGCUGCAGCCAGAGAUAC---AGCG ........---......((((((.((((.......((((((.....))))))((((...((((((((.......)))))))).-...)))).......))).).)))---.))) ( -29.90) >DroPse_CAF1 130825 105 - 1 ACGCGACGAGGACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCGGCGGCACAAGGAGAAUGCGCCAAAU---------GGAAAA .((((.((((.....)))))))).(((...(((.(((((((.....))))).)).)))...((((((.......))))))..)))........((....---------)).... ( -34.20) >DroGri_CAF1 162744 106 - 1 CUUCGACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAAUGCCAGCGGCAAAA-GAAAAUGCUGCAGCCUCACAGAA---UGU- .((((.((---(....))))((((.(((.......((((((.....))))))((((..(((((((((.......))))).)))-)..))))...)))..)))).)))---...- ( -31.00) >DroMoj_CAF1 235379 107 - 1 CGCCAACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAAUGCCAGCGGCAAAG-GAAAAUGCUGCAGCCGCAGAUAC---UGCG ........---......((((((............((((((.....))))))((((..(((((((((.......)))))))))-...))))((((....)))).)))---.))) ( -35.10) >DroPer_CAF1 122587 105 - 1 ACGCGACGAGGACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCGGCGGCACAAGGAGAAUGCGCCAAAU---------GGAAAA .((((.((((.....)))))))).(((...(((.(((((((.....))))).)).)))...((((((.......))))))..)))........((....---------)).... ( -34.20) >consensus CCGCGACG___ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGCGGCAAAA_GAAAAUGCGGCAGCC__A_A_A____AGCG ..................((((........(((.(((((((.....))))).)).))).((((((((.......))))))))......))))...................... (-24.45 = -24.87 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006