| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,793,140 – 12,793,257 |
| Length | 117 |
| Max. P | 0.846028 |
| Location | 12,793,140 – 12,793,257 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -34.92 |
| Consensus MFE | -30.70 |
| Energy contribution | -31.14 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846028 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12793140 117 - 20766785 AACCGAGGCGCAAGUCUGACCCGGCUC---CUAAUGAUCCAUCAAAGAUAAUUGGAAAUGUUUAGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUACGGAGCAAUGGUCAGAA .....((((....))))((((..((((---(...((((((...(((.((........)).)))..)))))).((((((((.........)))))))).......)))))...)))).... ( -36.50) >DroSec_CAF1 137356 117 - 1 AACCGAGGCGCAAGUCUGACCCGUCUC---CUAAUGAUCCAUCAAAGAUAAUUGGAAAUGUUUAGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUACGCAGCAAUGGCCAGAA ......((((((((((((((((..(((---((((...((((...........)))).....)))))))...)((............)).)))))))).))))...((....))))).... ( -34.10) >DroSim_CAF1 142512 117 - 1 AACCGAGGCGCAAGUCUGACCCGGCUC---CUAAUGAUCCAUCAAAGAUAAUUGGAAAUGUUUAGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUACGCAGCAAUGGCCAGAA ......(((((((((((((((.(((((---((((...((((...........)))).....)))))))))..((............)).)))))))).))))...((....))))).... ( -36.50) >DroEre_CAF1 138102 117 - 1 AACCGAGGCGCAAGUCUGACCCGGCUC---CUAAUGAUCCAUCAAAGAUAAUUUGAAAUGUUUAGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUAUGGAGCAAUGGCCAGAA .(((...(((((((((((((((((.((---.....)).)).(((((.....))))).........))))))))))))........))).)))..((((((((.....))))).))).... ( -36.50) >DroYak_CAF1 144125 120 - 1 AACCGAGGCGCCAGUCUGACCCGGCUCCUCCUAAUGAUCCAUCAAAGAUAAUUGGAAAUGUUUUGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUACGGAGAAAUGGCCAGAA ......(((((((((((((((((((...(((.(((.(((.......))).))))))...)))...)))))))))).......((((....)))))))......((......))))).... ( -31.00) >consensus AACCGAGGCGCAAGUCUGACCCGGCUC___CUAAUGAUCCAUCAAAGAUAAUUGGAAAUGUUUAGGGGUUAGGCUUGAUUAAUGAUGCAGGUCAGGCAUUGUACGGAGCAAUGGCCAGAA ......(((.(((((((((((((((.....(((((.(((.......))).)))))....)))...))))))))))))....(..((((.......))))..)...........))).... (-30.70 = -31.14 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:02 2006