Locus 3867

Sequence ID 2R_DroMel_CAF1
Location 12,791,457 – 12,791,549
Length 92
Max. P 0.731937
window6248

overview

Window 8

Location 12,791,457 – 12,791,549
Length 92
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -15.66
Consensus MFE -9.81
Energy contribution -9.33
Covariance contribution -0.48
Combinations/Pair 1.33
Mean z-score -1.76
Structure conservation index 0.63
SVM decision value 0.43
SVM RNA-class probability 0.731937
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12791457 92 - 20766785
UUUUAUUUU---CAUUACAGUUUACACAGAGAAAAUCCCAAAUUUGUUGUUCAUAUUUU-UGAACAAA----UU--------AACGCUCAAUUAAUAACCGAUUUUCU
.........---.................((((((((.........(((((((......-)))))))(----((--------((.......)))))....)))))))) ( -12.80)
>DroSec_CAF1 136020 90 - 1
UUUUAUUUG---CAUUACAGUUUACACAGAGAAAAUCCCAAAUUUGGUGUUCAUAUUUU-UGAACAAA--------------AAUAAUCACCGAUUUUCCGAUUUUCU
.........---.................((((((((..(((.((((((....((((((-(....)))--------------))))..)))))).)))..)))))))) ( -17.90)
>DroSim_CAF1 141173 90 - 1
UUUUAUUUG---CAUUACAGUUUACACAGAGAAAAUCACAAAUUUGGUGUUCACAUUUU-UGAACAAA--------------AAUAAUCACCGAUUUUCCGAUUUUCU
.........---.................((((((((..(((.((((((.....(((((-(....)))--------------)))...)))))).)))..)))))))) ( -16.10)
>DroEre_CAF1 136735 104 - 1
UUUUAUUUU---CACUACAGUUCACACAGAGAAAAUCACAGACUUGGUGUUCAAAUUUU-UGAAUGAAAGACAUACUACUCAAUUAGUAACCGAUUUUCCGGUUUUCU
.........---.................((((((((..(((.(((((((((((....)-)))))........(((((......)))))))))).)))..)))))))) ( -17.00)
>DroYak_CAF1 142763 104 - 1
UUUUAUUUUUUGCAUUUUAGUUUACACAGAGAAAAUCCCAGAUUUGGUGUUUAAAUUUUUUGAAUGAA----UUACUACUCAAUUAGUCACCGAUUCUCCGUUUUUCU
...........................(((((((.....(((.((((((.((((.....((((.((..----....)).)))))))).)))))).)))...))))))) ( -14.50)
>consensus
UUUUAUUUU___CAUUACAGUUUACACAGAGAAAAUCCCAAAUUUGGUGUUCAAAUUUU_UGAACAAA_____U________AAUAAUCACCGAUUUUCCGAUUUUCU
.............................((((((((..(((.((((((((((.......)))))........................))))).)))..)))))))) ( -9.81 =  -9.33 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006