Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,785,937 – 12,786,039 |
Length | 102 |
Max. P | 0.990833 |
Location | 12,785,937 – 12,786,039 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -24.05 |
Consensus MFE | -19.41 |
Energy contribution | -19.77 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -2.29 |
Structure conservation index | 0.81 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12785937 102 + 20766785 GUGUACUGCCAAAUUAAUUAGCCAAGUCAAAUGGAUGACAAUGAGAAUUAAUUAGGCAAGUCAAAACUCCAUUUUUGGAGCAGAGAUUU--ACUCGAAGAAUAA-- .((.((((((.((((((((..(...((((......))))...)..)))))))).))).)))))...(((((....)))))..(((....--.))).........-- ( -24.60) >DroSec_CAF1 130564 102 + 1 GAGUACUACCAAAUUAAUUAGCCAAGUCAAAUGGAUGACAAUGAGAAUUAAUUAGGCAAGUCAAAACUCCAUUUUUGGAGCAGCGAUUU--ACUCGAAGAAUAA-- ((((....((.((((((((..(...((((......))))...)..)))))))).)).(((((....(((((....)))))....)))))--)))).........-- ( -23.20) >DroSim_CAF1 135728 102 + 1 GUGUACUGCCAAAUUAAUUAGCCAAGUCAAAUGGAUGACAAUGAGAAUUAAUUAGGCAAGUCAAAACUCCAUUUUUGGAGCAGCGAUUU--ACUCGAAGAAUAA-- (.(((.((((.((((((((..(...((((......))))...)..)))))))).))))((((....(((((....)))))....)))))--)).).........-- ( -23.60) >DroEre_CAF1 131194 93 + 1 GUGUACUACCAAAUUAAUUAGCCAAGUCAGAUGGAUGACAAUAAGAAUUAAUUAGGCAAGUCAAAACUCCAUUUUUGGAGCAGCG-----------CAGAAUAA-- (((((((.((.((((((((......((((......))))......)))))))).))..))).....(((((....)))))..)))-----------).......-- ( -20.90) >DroYak_CAF1 137157 102 + 1 GUGUACUGCCAAAUUAAUUAGCCAAGUCAGAUGGAUGACAAUGAGAAUUAAUUGGGCAAGUCAAAACUCCAUUUUUGGAGCGGCGUUUU--ACCUGUAGAAUAA-- ......((((.((((((((..(...((((......))))...)..)))))))).)))).(((....(((((....))))).)))(((((--(....))))))..-- ( -25.80) >DroAna_CAF1 120633 106 + 1 GUGUACUGCCAAAUUAAUUAGCCAAGUCAGAUGGAUGACAAUGAGAAUUAAUUAGGCAAGUCAAAACUCUAUUUUUGGAGCAGUUUCUUCGGCUGGAAGAAUAAGC .((.((((((.((((((((..(...((((......))))...)..)))))))).))).)))))...(((((....)))))....((((((.....))))))..... ( -26.20) >consensus GUGUACUGCCAAAUUAAUUAGCCAAGUCAAAUGGAUGACAAUGAGAAUUAAUUAGGCAAGUCAAAACUCCAUUUUUGGAGCAGCGAUUU__ACUCGAAGAAUAA__ .((.((((((.((((((((......((((......))))......)))))))).))).)))))...(((((....))))).......................... (-19.41 = -19.77 + 0.36)
Location | 12,785,937 – 12,786,039 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.00 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -21.43 |
Energy contribution | -21.23 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -3.22 |
Structure conservation index | 0.85 |
SVM decision value | 2.23 |
SVM RNA-class probability | 0.990833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12785937 102 - 20766785 --UUAUUCUUCGAGU--AAAUCUCUGCUCCAAAAAUGGAGUUUUGACUUGCCUAAUUAAUUCUCAUUGUCAUCCAUUUGACUUGGCUAAUUAAUUUGGCAGUACAC --...........((--(..((...((((((....))))))...)).(((((.((((((((..(...((((......))))...)..)))))))).)))))))).. ( -26.00) >DroSec_CAF1 130564 102 - 1 --UUAUUCUUCGAGU--AAAUCGCUGCUCCAAAAAUGGAGUUUUGACUUGCCUAAUUAAUUCUCAUUGUCAUCCAUUUGACUUGGCUAAUUAAUUUGGUAGUACUC --.........((((--(..(((..((((((....))))))..))).(((((.((((((((..(...((((......))))...)..)))))))).)))))))))) ( -28.00) >DroSim_CAF1 135728 102 - 1 --UUAUUCUUCGAGU--AAAUCGCUGCUCCAAAAAUGGAGUUUUGACUUGCCUAAUUAAUUCUCAUUGUCAUCCAUUUGACUUGGCUAAUUAAUUUGGCAGUACAC --...........((--(..(((..((((((....))))))..))).(((((.((((((((..(...((((......))))...)..)))))))).)))))))).. ( -27.10) >DroEre_CAF1 131194 93 - 1 --UUAUUCUG-----------CGCUGCUCCAAAAAUGGAGUUUUGACUUGCCUAAUUAAUUCUUAUUGUCAUCCAUCUGACUUGGCUAAUUAAUUUGGUAGUACAC --........-----------((..((((((....))))))..))(((.(((.((((((((......((((......))))......)))))))).)))))).... ( -21.00) >DroYak_CAF1 137157 102 - 1 --UUAUUCUACAGGU--AAAACGCCGCUCCAAAAAUGGAGUUUUGACUUGCCCAAUUAAUUCUCAUUGUCAUCCAUCUGACUUGGCUAAUUAAUUUGGCAGUACAC --..........(((--.....)))((((((....))))))..(((((.(((.((((((((..(...((((......))))...)..)))))))).)))))).)). ( -25.40) >DroAna_CAF1 120633 106 - 1 GCUUAUUCUUCCAGCCGAAGAAACUGCUCCAAAAAUAGAGUUUUGACUUGCCUAAUUAAUUCUCAUUGUCAUCCAUCUGACUUGGCUAAUUAAUUUGGCAGUACAC ((...((((((.....))))))...))..(((((......)))))(((.(((.((((((((..(...((((......))))...)..)))))))).)))))).... ( -23.40) >consensus __UUAUUCUUCGAGU__AAAUCGCUGCUCCAAAAAUGGAGUUUUGACUUGCCUAAUUAAUUCUCAUUGUCAUCCAUCUGACUUGGCUAAUUAAUUUGGCAGUACAC .........................((((((....))))))....(((.(((.((((((((..(...((((......))))...)..)))))))).)))))).... (-21.43 = -21.23 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:00 2006