| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,782,100 – 12,782,193 |
| Length | 93 |
| Max. P | 0.587605 |
| Location | 12,782,100 – 12,782,193 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.34 |
| Mean single sequence MFE | -13.60 |
| Consensus MFE | -9.83 |
| Energy contribution | -9.63 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587605 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12782100 93 + 20766785 AAUAUUCGCGUUGUAAUAUAAUGCAAAUUUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGA---CUAUUAA-ACAAACAAAAUGG--AGAAAAAA .......(((((((...)))))))...(((..(((((((((.((((..(((......))).))))---.))....-......)))))))--..)))... ( -17.10) >DroSec_CAF1 126727 87 + 1 AAUAUUCGCGUUGUAAUGUAAUGCAAAUUUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGA---CUAUUAA-ACAAACAAAAAAAAA-------- .......((((((.....))))))...........((..((.((((..(((......))).))))---.))..))-...............-------- ( -11.40) >DroSim_CAF1 131954 95 + 1 AAUAUUCGCGUUGUAAUGUAAUGCAAAUUUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGA---CUAUUAA-ACAAACAAACAAAAAAAAAAAAA .......((((((.....))))))...........((..((.((((..(((......))).))))---.))..))-....................... ( -11.40) >DroEre_CAF1 127352 80 + 1 AAAAAUCGUGUUGUAAUGUAAUGCAAAUUUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGA---CCAUUAA-AUAAACAA--------------- ........((((.(((((....((.......)).........((((..(((......))).))))---.))))).-...)))).--------------- ( -11.10) >DroYak_CAF1 132451 84 + 1 AAAAUUCGCGUUGUAAUGUAAUGCAAAUCUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGACGACCAUUAA-AACAACAA--------------A .........(((((....(((((....(((((....(((......)))(((......))))))))....))))).-.)))))..--------------. ( -14.70) >DroAna_CAF1 117250 79 + 1 --AAAUCGUGUUCAAAUGUAAUGCAAAUUCAGCAAUUUUUAUUCUAAUGCCGGGCAAGGCCUAGG---CCACGAAAAUAAACAA--------------- --...(((((...........(((.......)))..............(((((((...)))).))---))))))..........--------------- ( -15.90) >consensus AAAAUUCGCGUUGUAAUGUAAUGCAAAUUUAGCCAUUUUUAUUCUAAAGCCGGACAAGGCCUAGA___CCAUUAA_ACAAACAA_______________ .......((((((.....))))))..................((((..(((......))).)))).................................. ( -9.83 = -9.63 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:57 2006