Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,774,485 – 12,774,583 |
Length | 98 |
Max. P | 0.814425 |
Location | 12,774,485 – 12,774,583 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 97.37 |
Mean single sequence MFE | -12.53 |
Consensus MFE | -11.85 |
Energy contribution | -12.02 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.03 |
Structure conservation index | 0.95 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12774485 98 + 20766785 U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG (---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60) >DroSec_CAF1 118388 98 + 1 U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG (---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60) >DroSim_CAF1 123978 98 + 1 U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCACUG (---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.30) >DroEre_CAF1 119482 98 + 1 U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG (---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60) >DroYak_CAF1 124315 101 + 1 UAAAGCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG ....((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)).... ( -13.10) >DroAna_CAF1 109418 98 + 1 U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUACACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAACA (---((...(((((.((((......)))))................(((............)))...........))))((.....)).......)))... ( -8.00) >consensus U___GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG ....((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)).... (-11.85 = -12.02 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006