Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,765,046 – 12,765,141 |
Length | 95 |
Max. P | 0.500000 |
Location | 12,765,046 – 12,765,141 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -16.72 |
Energy contribution | -17.50 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.15 |
Mean z-score | -1.33 |
Structure conservation index | 0.65 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12765046 95 + 20766785 AAGAAGAGCGCCACAGUUGGUUUGAGUUCGGCAUAAGCACGGCGCCAGCAAAGUUGUAAAAUCGCCAAAUGGCAUAUAAAA--------------AUUGCUGGAA--UUGU--- .....((((((((....))))....)))).((....))((((..(((((((..(((((.....(((....))).)))))..--------------.)))))))..--))))--- ( -24.30) >DroVir_CAF1 143196 109 + 1 GACGAGCGCGCCACAGUUGGUUUGGGUUUGGCAUAAGUCAGGCGCCAGCAAAGUUGUAAAAUCGCCAAAUGGCUUAUAAAACCAAACAAAAAAAAAAUGCUGGAA--UUGU--- ..(.((((.((((....))))....((((((.((((((((((((...(((....))).....))))...))))))))....))))))..........)))).)..--....--- ( -26.90) >DroPse_CAF1 100338 97 + 1 GGGUGGAGCGCCACAGUUGGUUUGGGUACGGCAUAAGCCAGGCGCCAGCAAAGUUGUAAAAUCGGCAAAUGGCAUAUAAAA--------------AUCGUUGGGUUUUUGU--- .........((((..((((((....((..(((....)))..))))))))...((((......))))...))))..((((((--------------(((....)))))))))--- ( -26.10) >DroGri_CAF1 123467 100 + 1 GACGAGCGCGCCACAGUUGGUUUGGGUUUGGCAUAAGGCAGGCGCCAGCAAAGUUGUAAAAUCGGCAAAUGGCAUAUAAAAAAA-GA--------AAUGCUCGAA--AUGU--- ..(((((..((((..((((((....(((((.(....).)))))))))))...((((......))))...))))..........(-..--------..))))))..--....--- ( -28.40) >DroWil_CAF1 163585 95 + 1 AGGCCAAGCGCCACAGUUGGUUUGGGUAUGGCAUAAGUCAGGCGCCAGGAAAGCUGUAAAAUCGGUAAAUGGCAUAUAAAA--------------AUCGUUGAAA--UUGU--- ..((((...(((((((((..(((((((.((((....)))).)).)))))..))))))......)))...))))........--------------..........--....--- ( -25.80) >DroAna_CAF1 98768 95 + 1 AA---GAGCGCCACAGUUGGUUUGGGUUCGGCAUAAGCCAGGCGCCAGCAAAGUUGUAAAAUCGGCAAAUGGCAUAUAAAA--------------AUCGCUGGAA--UUGUUGU ..---..(((((.(((.....))).....(((....))).)))))((((((.((((......))))....(((........--------------...)))....--)))))). ( -23.70) >consensus AAGGAGAGCGCCACAGUUGGUUUGGGUUCGGCAUAAGCCAGGCGCCAGCAAAGUUGUAAAAUCGGCAAAUGGCAUAUAAAA______________AUCGCUGGAA__UUGU___ .........((((..((((((....(((.(((....))).)))))))))...((((......))))...))))......................................... (-16.72 = -17.50 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:53 2006