Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,364,036 – 2,364,226 |
Length | 190 |
Max. P | 0.993957 |
Location | 2,364,036 – 2,364,149 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.87 |
Mean single sequence MFE | -25.56 |
Consensus MFE | -24.82 |
Energy contribution | -24.86 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.68 |
Structure conservation index | 0.97 |
SVM decision value | 2.44 |
SVM RNA-class probability | 0.993957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2364036 113 - 20766785 GGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUCCUUGCCUGCCUUCC-------CCCAUC ((((((..((((((....((((.(((((..((((..((((.....))))..))))..))))).((((.....))))))))..)))))))))))).............-------...... ( -26.90) >DroSec_CAF1 13562 120 - 1 GGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUCCUUGCCUGCCUCCCUUCCCCCUUCCUU ((((((..((((((....((((.(((((..((((..((((.....))))..))))..))))).((((.....))))))))..)))))))))))).......................... ( -26.90) >DroSim_CAF1 13663 113 - 1 GGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUUCUUGCCUGCCUCCC-------UUCCUU ((.(((..(((((((........(((((..((((..((((.....))))..))))..))))).......(..((.......))..))))))))..)))...))....-------...... ( -25.00) >DroEre_CAF1 13278 110 - 1 GGAGCAUA-AGCGAAAAAUGUUCUUGUUAACAAAUUGAAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUCCUUGUCCGCCGCC---------CCAUC ((((((.(-(((((....(((..(((..(((((((........))))).))..)))..)))..((((.....))))......))))))))))))............---------..... ( -22.10) >DroYak_CAF1 13037 111 - 1 GGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUCCUCGCCUGCCGCC---------UCAUC ((((((..((((((....((((.(((((..((((..((((.....))))..))))..))))).((((.....))))))))..))))))))))))............---------..... ( -26.90) >consensus GGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAAAACAUUUGCUUUUUGAAGACAAAUUACUCGUGGUGAAACAAAUUGCUUUGCUCCUUGCCUGCCUCCC________UCAUC ((((((...(((((....((((.(((((..((((..((((.....))))..))))..))))).((((.....))))))))..))))).)))))).......................... (-24.82 = -24.86 + 0.04)
Location | 2,364,109 – 2,364,226 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -21.76 |
Energy contribution | -21.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.85 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2364109 117 - 20766785 AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGGAAAAGC---AAAAAGUAAAACAAGGGACAAGAGGUUCGGUGGGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAA (((((.(((((..((.(((((............))))).....))---...............((((.....)))))))))((((((..........)))))))))))............ ( -25.30) >DroSec_CAF1 13642 120 - 1 AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGGAAAAGCAGGAAAAAGUGAAACAAGGGACGAGAGGUUCGGUGGGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAA (((((.(((((..((.(((((............))))).....))..................((((.....)))))))))((((((..........)))))))))))............ ( -25.50) >DroSim_CAF1 13736 120 - 1 AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGGAAAAGCAGGAAAAAGUGAAACAAGGGACGAGAGGUUCGGUGGGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAA (((((.(((((..((.(((((............))))).....))..................((((.....)))))))))((((((..........)))))))))))............ ( -25.50) >DroEre_CAF1 13349 113 - 1 AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGGAGGAGC---AAAAAGUAAAACAAGG-AC--GAGGUUCGGUGGGAGCAUA-AGCGAAAAAUGUUCUUGUUAACAAAUUGAAA (((((.(((((..((.(((.((..((......))..)).))).))---..............((-((--...)))))))))((((((.-........)))))))))))............ ( -27.70) >DroYak_CAF1 13108 112 - 1 AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGAAAAAGC---AAAAAGUAAAACAAGG-----GAGGUUCGGUGGGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAA (((((.(((((....((((.((......(((.(((........))---)....)))......))-----.))))..)))))((((((..........)))))))))))............ ( -24.00) >consensus AACAAGCCGCCAAGCGCCUGCCAACAAAUACAUGCAGGGAAAAGC___AAAAAGUAAAACAAGGGAC_AGAGGUUCGGUGGGAGCAUAAAGCGAAAAAUGUUCUUGUUAACAAAUUGCAA (((((.(((((.(((.(((((............)))))...............(.....)............))).)))))((((((..........)))))))))))............ (-21.76 = -21.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:08 2006