Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,748,308 – 12,748,409 |
Length | 101 |
Max. P | 0.931313 |
Location | 12,748,308 – 12,748,409 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 86.79 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -19.82 |
Energy contribution | -20.32 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.08 |
Mean z-score | -3.24 |
Structure conservation index | 0.65 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12748308 101 + 20766785 AUGAAAGGUUUUUCAAGUAACCGUC---GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA .......(((((((.....((((((---((..(((.....((((((.(((...((((....))))))).))))))....)))..))))))))...))))))).. ( -33.90) >DroSec_CAF1 94743 101 + 1 AUGAAAGGUUUUUCAAGUAACCGUC---GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUUUGGUUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA .......(((((((.....((((((---((((((........))))..((((...((((((((...)))).))))...))))..))))))))...))))))).. ( -27.50) >DroSim_CAF1 102018 101 + 1 AUGAAAGGUUUUUCAAGUAACCGUC---CAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA .......(((((((.....((((((---.(..(((.....((((((.(((...((((....))))))).))))))....)))..).))))))...))))))).. ( -30.10) >DroEre_CAF1 95905 84 + 1 AUGAAAGGUUUUUCAAGUAAGCGUC---GAGC--UGCGAG---------------CUUACUAGUUUGUGGCUAGGAAAAGUGAACUGACGCUGUGGAAAAGCCA ......((((((((.....((((((---.(((--..((((---------------((....))))))..)))......((....))))))))...)))))))). ( -35.20) >DroYak_CAF1 102702 104 + 1 AUGAAAGGUUUUUCAAGUAAACGUCGUCGAGCGAUGCGAGCUAAGCGACAUUCAGCUGACGAGUUUGUGGCUAGGAAAAGUGAAUUGACAGUGUGGAAAAGCAA .......(((((((........(((((..(((.......)))..))))).....((((.(((.....(.(((......))).).))).))))...))))))).. ( -25.00) >consensus AUGAAAGGUUUUUCAAGUAACCGUC___GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA .......(((((((.....((((((.....((.....(((((...........))))).(((((.....))))).....)).....))))))...))))))).. (-19.82 = -20.32 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006