Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,741,699 – 12,741,798 |
Length | 99 |
Max. P | 0.817140 |
Location | 12,741,699 – 12,741,798 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.99 |
Mean single sequence MFE | -20.78 |
Consensus MFE | -14.09 |
Energy contribution | -14.20 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.62 |
Structure conservation index | 0.68 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817140 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12741699 99 + 20766785 CAUCAGCCAA-AUACUUCCGCUUAGGGACGAUCUCU--CCCCUAACUCUAUAUCCGAU-----U-------------UUUUUUUAUUUUGUUCACACAAAGUGUCAAGUGUUUGAGUGGC ..(((..(((-((((((....((((((..(....).--.)))))).............-----.-------------......((((((((....))))))))..)))))))))..))). ( -19.90) >DroSec_CAF1 88022 97 + 1 CAUCAGCCAA-AUACUUCCGCUUAGGGAUGAUCUCU--CCCCUAACCCUAUAUCCUCA-----U-------------UU--UUUUUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC ..(((..(((-((((((.(((((((((..(....).--.)))))).............-----.-------------..--.....((((......)))))))..)))))))))..))). ( -19.60) >DroSim_CAF1 95308 97 + 1 CAUCAGCCAA-AUACUUCCGCUUAGGGAUGAUCUCU--CCCCUAACCCUAUAUCCUCA-----U-------------UU--UUUUUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC ..(((..(((-((((((.(((((((((..(....).--.)))))).............-----.-------------..--.....((((......)))))))..)))))))))..))). ( -19.60) >DroEre_CAF1 89363 104 + 1 CAUCAGCCAA-ACACUUCCGUUUAGGGACGAUCUCG--CCCCUAACUCUGCAUCCGAUACCCUU-------------UUUUUAUAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC ..(((..(((-((((((....((((((.((....))--.))))))...................-------------.....((((((((......)))))))).)))))))))..))). ( -24.90) >DroYak_CAF1 95830 117 + 1 CAUCAGCCAA-ACACUUCCGUUUAGGGACGAUCUCU--CCCCUAACCCUAUAUCCUAUAUCCCUUAUCCUUUUUUAUUUUCUACAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC ..(((..(((-((((((..(((..((((.(....))--)))..)))....................................((((((((......)))))))).)))))))))..))). ( -24.10) >DroAna_CAF1 81938 100 + 1 CAGCCGCCAAAAUACUUCCGUUUAUGUCCGAUCUGUAGCCCCUAACUCCGCGUAUUUA-----U-------------UU--UCUGUAUCUCGCACAAAAAGUGUCAAGUGUUUAAGUGGC ..(((((..((((((((.....(((((..((....(((...)))..)).)))))....-----.-------------..--..........((((.....)))).))))))))..))))) ( -16.60) >consensus CAUCAGCCAA_AUACUUCCGCUUAGGGACGAUCUCU__CCCCUAACCCUAUAUCCUAA_____U_____________UU__UUUAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC .....((((..((((((....((((((............))))))...............................................(((.....)))..)))))).....)))) (-14.09 = -14.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:43 2006