Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,739,134 – 12,739,234 |
Length | 100 |
Max. P | 0.999475 |
Location | 12,739,134 – 12,739,234 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -30.30 |
Energy contribution | -30.54 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.16 |
Mean z-score | -3.29 |
Structure conservation index | 0.87 |
SVM decision value | 3.64 |
SVM RNA-class probability | 0.999475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12739134 100 + 20766785 GCUGUCAUGUUGCUGCAUUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCAUGUGUGAAUGUACAGCGGUAUGUGU----------GUGUGUGAGCCU ((...((((..(((((((((((.(((((((((.(((..((.......))...))).))))))))).)))))))..))))..))))...----------)).......... ( -34.90) >DroSec_CAF1 85457 98 + 1 GCUGUCAUGUUGCUGCAUUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCAUGUGUGAAUGUACAGUGGUAUGUGU------------GUAUGAGCCU ((...((((..(((((((((((.(((((((((.(((..((.......))...))).))))))))).)))))))..))))..))))...------------))........ ( -33.60) >DroSim_CAF1 92708 98 + 1 GCUGUCAUGUUGCUGCAUUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCAUGUGUGAAUGUACAGCGGUAUGUGU------------GUGUGAGCCU ((...((((..(((((((((((.(((((((((.(((..((.......))...))).))))))))).)))))))..))))..))))...------------))........ ( -34.90) >DroYak_CAF1 93135 110 + 1 GCUGUCAUGUCGCUGCAUUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCAUGUGUGAAUGUACAGCGAUAUAUGUGAGUGUGUGUGUGUGGGAGCCU (((.((((((((((((((((((.(((((((((.(((..((.......))...))).))))))))).)))))))..)))))))(((..(......)..))))))).))).. ( -41.30) >DroAna_CAF1 79539 93 + 1 GCUGUCAUGUCGCUGCACUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCCUGUGUGAGUGCACAUUCCCAUUUGAGG----------GUA------- (((.(((......(((((((((.((.((((((.(((..((.......))...))).)))))).)).)))))))))..........))).)----------)).------- ( -29.39) >consensus GCUGUCAUGUUGCUGCAUUCACUCGUGCAUACAUGAAAGUCAAUUAAGCGUAUUAAGUGUGCAUGUGUGAAUGUACAGCGGUAUGUGU____________GUGUGAGCCU .....(((((((((((((((((.(((((((((.(((..((.......))...))).))))))))).)))))))..))))))))))......................... (-30.30 = -30.54 + 0.24)
Location | 12,739,134 – 12,739,234 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -16.37 |
Energy contribution | -16.85 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.62 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12739134 100 - 20766785 AGGCUCACACAC----------ACACAUACCGCUGUACAUUCACACAUGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAAUGCAGCAACAUGACAGC ............----------...(((...((((..(((((((.(.((((.((........(......)........)).)))).).)))))))))))...)))..... ( -19.69) >DroSec_CAF1 85457 98 - 1 AGGCUCAUAC------------ACACAUACCACUGUACAUUCACACAUGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAAUGCAGCAACAUGACAGC ..........------------..........((((.(((((((.(.((((.((........(......)........)).)))).).)))))))((......)))))). ( -16.09) >DroSim_CAF1 92708 98 - 1 AGGCUCACAC------------ACACAUACCGCUGUACAUUCACACAUGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAAUGCAGCAACAUGACAGC ..........------------...(((...((((..(((((((.(.((((.((........(......)........)).)))).).)))))))))))...)))..... ( -19.69) >DroYak_CAF1 93135 110 - 1 AGGCUCCCACACACACACACUCACAUAUAUCGCUGUACAUUCACACAUGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAAUGCAGCGACAUGACAGC .........................(((.((((((..(((((((.(.((((.((........(......)........)).)))).).))))))))))))).)))..... ( -23.39) >DroAna_CAF1 79539 93 - 1 -------UAC----------CCUCAAAUGGGAAUGUGCACUCACACAGGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAGUGCAGCGACAUGACAGC -------..(----------((......)))..(((((.((.....)))))))..................((.((((((.(((((......)))))...)))))).)). ( -26.90) >consensus AGGCUCACAC____________ACACAUACCGCUGUACAUUCACACAUGCACACUUAAUACGCUUAAUUGACUUUCAUGUAUGCACGAGUGAAUGCAGCAACAUGACAGC ...............................((((..(((((((.(.((((.((........(......)........)).)))).).)))))))))))........... (-16.37 = -16.85 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:41 2006