Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,723,329 – 12,723,439 |
Length | 110 |
Max. P | 0.999766 |
Location | 12,723,329 – 12,723,439 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 95.73 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -24.56 |
Energy contribution | -24.60 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -3.57 |
Structure conservation index | 0.88 |
SVM decision value | 4.03 |
SVM RNA-class probability | 0.999766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12723329 110 + 20766785 CUUGCCAUUUCUGCACAAAUAAAUCAAAUAUGAUUAUUUGAUGACCUUUCUGCCCCAAAUGCUGACGUUGCCACACUCAUAUAUGCAGCAAAUUAGCAUUUGUUCAGGCA ..((((......(((.(((...((((((((....))))))))....))).)))..((((((((((.(((((.............)))))...))))))))))....)))) ( -29.52) >DroSec_CAF1 69649 110 + 1 CUUGCAAUUUCCGCACAAAUAAAUCAAAUAUGAUUAUUUGAUGACCUUUCUGCCCCAAAUGCUGACGUUGCCACACUCAUAUCUGCAGCAAAUUAGCAUUUGUUCAGGCA ..(((.......))).......((((((((....)))))))).........(((.((((((((((.(((((.............)))))...))))))))))....))). ( -26.32) >DroSim_CAF1 75517 110 + 1 CUUGCAAUUUCUGCACAAAUAAAUCAAAUAUGAUUAUUUGAUAACCUUUCUGCCCCAAAUGCUGACGUUGCCACACUCAUAUCUGCAGCAAAUUAGCAUUGGUUCGGGCA ..((((.....)))).......((((((((....)))))))).........((((..((((((((.(((((.............)))))...)))))))).....)))). ( -28.02) >DroEre_CAF1 70504 110 + 1 CUUGCAAUUUCUGGAGAUAUAAAUCAAAUAUGAUUAUUUGAUGACCCUUCUGCCCCAAAUGCUGAUGUUGCCACACUCAUAUCUGCAGCAAAUUAGCAUUUGUUCAGGCA ............((((......((((((((....))))))))....)))).(((.((((((((((((((((.............))))))..))))))))))....))). ( -29.22) >DroYak_CAF1 77402 110 + 1 CUUGCAAUUUCUGAACAAAUAAAUCAAAUAUGAUUAUUUGAUGACCUUUCUGCCCCAAAUGCUGACGUUGCCACACUCAUAUCUGCAGCAAAUUAGCAUUUGUUCAGGCA .........(((((((((((..((((((((....))))))))..................(((((.(((((.............)))))...)))))))))))))))).. ( -26.82) >consensus CUUGCAAUUUCUGCACAAAUAAAUCAAAUAUGAUUAUUUGAUGACCUUUCUGCCCCAAAUGCUGACGUUGCCACACUCAUAUCUGCAGCAAAUUAGCAUUUGUUCAGGCA ..(((.................((((((((....)))))))).......(((...((((((((((.(((((.............)))))...))))))))))..)))))) (-24.56 = -24.60 + 0.04)
Location | 12,723,329 – 12,723,439 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.73 |
Mean single sequence MFE | -32.30 |
Consensus MFE | -28.42 |
Energy contribution | -28.30 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.93 |
Structure conservation index | 0.88 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12723329 110 - 20766785 UGCCUGAACAAAUGCUAAUUUGCUGCAUAUAUGAGUGUGGCAACGUCAGCAUUUGGGGCAGAAAGGUCAUCAAAUAAUCAUAUUUGAUUUAUUUGUGCAGAAAUGGCAAG ((((....((((((((.((((((..(((......)))..)))).)).))))))))..(((.(((....((((((((....))))))))...))).)))......)))).. ( -36.90) >DroSec_CAF1 69649 110 - 1 UGCCUGAACAAAUGCUAAUUUGCUGCAGAUAUGAGUGUGGCAACGUCAGCAUUUGGGGCAGAAAGGUCAUCAAAUAAUCAUAUUUGAUUUAUUUGUGCGGAAAUUGCAAG (((.....((((((((.((((((..((........))..)))).)).))))))))..(((.(((....((((((((....))))))))...))).))).......))).. ( -31.30) >DroSim_CAF1 75517 110 - 1 UGCCCGAACCAAUGCUAAUUUGCUGCAGAUAUGAGUGUGGCAACGUCAGCAUUUGGGGCAGAAAGGUUAUCAAAUAAUCAUAUUUGAUUUAUUUGUGCAGAAAUUGCAAG (((.....((((((((.((((((..((........))..)))).)).)))).)))).(((.(((....((((((((....))))))))...))).))).......))).. ( -30.60) >DroEre_CAF1 70504 110 - 1 UGCCUGAACAAAUGCUAAUUUGCUGCAGAUAUGAGUGUGGCAACAUCAGCAUUUGGGGCAGAAGGGUCAUCAAAUAAUCAUAUUUGAUUUAUAUCUCCAGAAAUUGCAAG (((((...((((((((.((((((..((........))..)))).)).)))))))))))))(.(((...((((((((....)))))))).....))).)............ ( -29.40) >DroYak_CAF1 77402 110 - 1 UGCCUGAACAAAUGCUAAUUUGCUGCAGAUAUGAGUGUGGCAACGUCAGCAUUUGGGGCAGAAAGGUCAUCAAAUAAUCAUAUUUGAUUUAUUUGUUCAGAAAUUGCAAG ((((((((((((((((..((((((.(((((.(((.(((....))))))..))))).))))))..))).((((((((....))))))))..)))))))))).....))).. ( -33.30) >consensus UGCCUGAACAAAUGCUAAUUUGCUGCAGAUAUGAGUGUGGCAACGUCAGCAUUUGGGGCAGAAAGGUCAUCAAAUAAUCAUAUUUGAUUUAUUUGUGCAGAAAUUGCAAG (((((...((((((((.((((((..((........))..)))).)).)))))))))))))........((((((((....))))))))...................... (-28.42 = -28.30 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:35 2006