Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,697,651 – 12,697,752 |
Length | 101 |
Max. P | 0.676468 |
Location | 12,697,651 – 12,697,752 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 76.46 |
Mean single sequence MFE | -27.61 |
Consensus MFE | -17.50 |
Energy contribution | -17.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.63 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12697651 101 - 20766785 GACAAGUGGCCAGAACCCGA-ACCGCCC----CUAACCGCCUACCAUACCAACCCCAUCUUGGGGC-U------UCAACGUAUU---CCGGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((........((-(..((((----(............................)))))-)------))((((....---((((....)))))))))))))))...... ( -26.89) >DroSec_CAF1 44543 101 - 1 GACAAGUGGCCAGAACCCGU-CCCGCCC----CUAACCUCCCACCAUGCCAACCCCAUCUUGGGGC-A------CCAACGUAUU---CCUGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((..(((..(((-...((((----(............................)))))-.------...)))..))---)..(((....)))...)))))))...... ( -25.19) >DroSim_CAF1 47474 101 - 1 GACAAGUGGCCAGAACCCGU-CCCGCCC----CCAACCGCCCACCAUGCCCAACCCAUCUUGGGGC-A------CCAACGUAUU---CCUGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((..(((..(((-...((((----(............................)))))-.------...)))..))---)..(((....)))...)))))))...... ( -23.99) >DroEre_CAF1 45187 108 - 1 GACAAGUGGCCAGAAACCCGCCCCGCCCCGCCCUCACCGCC-UCCAUAGCAACCCCAUCUUGGGGC-U------CCAAUACGUUGGGGCUGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((.........((........))......((((-....(((((..(((.....)))((-(------((((....))))))))))))...))))..)))))))...... ( -35.70) >DroYak_CAF1 47315 96 - 1 GACAAGUGGCCAGAACCCAACCC---------CCCACCACC-CCCAUGUCAACCCCAUCUUGGGGC-U------CCAACGUAUU---GCUGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((.............---------.........-...((((...((((.....)))).-.------...))))...---((((.....))))...)))))))...... ( -22.00) >DroAna_CAF1 43036 91 - 1 GACAAGUGGCCAG---CCAGCCC---------ACGAC----------CCCGCCCACAUUUUGGGGGCAUGGUUCGUAACGUAUU---CCGGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((..(---((((((.---------(((((----------(..((((.(.....).))))..)).))))...(....---.)))))....)))...)))))))...... ( -31.90) >consensus GACAAGUGGCCAGAACCCGA_CCCGCCC____CCAACCGCC_ACCAUGCCAACCCCAUCUUGGGGC_A______CCAACGUAUU___CCUGCUACCCGGCGUUGCCACUUAAUUAG ...(((((((..........................................((((.....)))).........................(((....)))...)))))))...... (-17.50 = -17.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:25 2006