Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,363,302 – 2,363,422 |
Length | 120 |
Max. P | 0.737588 |
Location | 2,363,302 – 2,363,422 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.83 |
Mean single sequence MFE | -38.90 |
Consensus MFE | -30.06 |
Energy contribution | -31.58 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.06 |
Mean z-score | -1.81 |
Structure conservation index | 0.77 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2363302 120 + 20766785 UUAAAUCGCUGCGAGUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC .....((((((.((((((((.....))))))(((((((((..........((((....)))).....(((((((((.........).))))))))..)))))))))...))))))))... ( -42.50) >DroSec_CAF1 12823 120 + 1 UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC .....((((((.((.(((((.....))))).(((((((((..........((((....)))).....(((((((((.........).))))))))..)))))))))...))))))))... ( -39.20) >DroSim_CAF1 12927 120 + 1 UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCGGGGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGUUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC .....((((((.((.(((((.....))))).(((((((((........((((((...))))))....(((((((((.........).))))))))..)))))))))...))))))))... ( -37.60) >DroEre_CAF1 12605 119 + 1 UUAAACAG-UGCGAAUGCUCAUGGCGAGCACUGACCGCAUACUGCAAUAUCCCGUGGCCGGUUUCAAUUUAUGGCCACACGAAGCGCGCUAUGAAAAAUGUGGUCAGCAUGCAGCGAGGC ........-((((..(((((.....)))))((((((((((.............(((((((...........))))))).((.((....)).))....))))))))))..))))....... ( -37.80) >DroYak_CAF1 12309 119 + 1 UUUAACCGCUGCGAAUUUUCAUGGCGAGCACUGACGGCACACUUCAAUAUCCCGUGGCCGGUUUCAAUUUAUGGCCACACGAAAU-CGCUAUGAAAAAUGUGGUCAACAUUCAGCGAGGC ......(((((....((((((((((((.(..(((.(.....).))).......(((((((...........)))))))..)...)-)))))))))))((((.....)))).))))).... ( -37.40) >consensus UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC .....((((((.((.(((((.....))))).(((((((((.............(((((((...........))))))).((.....)).........)))))))))...))))))))... (-30.06 = -31.58 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:04 2006